Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4d10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15086 g15086.t11 TSS g15086.t11 3854791 3854791
chr_4 g15086 g15086.t11 isoform g15086.t11 3854821 3856861
chr_4 g15086 g15086.t11 exon g15086.t11.exon1 3854821 3855255
chr_4 g15086 g15086.t11 cds g15086.t11.CDS1 3855066 3855255
chr_4 g15086 g15086.t11 exon g15086.t11.exon2 3855357 3855572
chr_4 g15086 g15086.t11 cds g15086.t11.CDS2 3855357 3855572
chr_4 g15086 g15086.t11 exon g15086.t11.exon3 3855663 3855732
chr_4 g15086 g15086.t11 cds g15086.t11.CDS3 3855663 3855732
chr_4 g15086 g15086.t11 exon g15086.t11.exon4 3855786 3856075
chr_4 g15086 g15086.t11 cds g15086.t11.CDS4 3855786 3856075
chr_4 g15086 g15086.t11 exon g15086.t11.exon5 3856133 3856372
chr_4 g15086 g15086.t11 cds g15086.t11.CDS5 3856133 3856372
chr_4 g15086 g15086.t11 exon g15086.t11.exon6 3856475 3856633
chr_4 g15086 g15086.t11 cds g15086.t11.CDS6 3856475 3856633
chr_4 g15086 g15086.t11 exon g15086.t11.exon7 3856686 3856861
chr_4 g15086 g15086.t11 cds g15086.t11.CDS7 3856686 3856861
chr_4 g15086 g15086.t11 TTS g15086.t11 3856885 3856885

Sequences

>g15086.t11 Gene=g15086 Length=1586
ATGGAAACGTTTACTTTTGTACTTATTTTATTTTTTCTATTACTTGCTTGGTATTATAGT
GAATATCGATTTCGTTTCCAATCGATTTCTAAATTTCCGGGACCAAAAAGGTAAATTTTA
TTTAAATTAATTTTTTTTTGCAATTTGTAAATTTCAAACTGATTTAAAATTTAATATGAA
ATTTTATGTTTAAAAGATTAATTAATTTTTTTAATTGAAGAATTCCGTTTTTTGGCAATG
CGTTAATGTTCATTGGTAAAAAGCCGTCAGAAATTTTGACAATTGTTGAGCAATTACATC
GTGAATATGGAAATGTTTTGTGCCTTATGATGGGTTCACAACCTGAAATATTATTAACAA
GTCCCGAAGACGTTGAAGTTGTTTTGGGAAGTTCAAAATTGATTAAAAAATCTGATGAAT
ATGATTTTATGACAGATTGGCTCGGCACTGGATTATTAATTGCAAGTGGACTAAAATGGT
TTCAAAAAAGAAAAATAACCACGCCAGCTTTTCATCTTCAAATTCTTGATCAATTTGTTG
AAATTTTTGACAAACATAGTGCAATTTTTGTAAAAAATCTCGCAAAGTCTGAAGGTCATT
CAATAGATGTTTTTCAGCCAATTACACTTTGCGCTCTAGACATTATCTGCGAGACTGCTA
TGGGAATTGAAATTCACGCTCAGGCAAATTCAAATTCTGATTATGTTCGTGCTGTTAAAG
AAATGAGTAATTTAGCAATGGCAAGAAGCGTCAATTTTTTCTTAAGAAATAAAATTATTT
ATAAATTTTCATCAATGAAAAGACGACAAGATAAATTGTTAAAAATTTTACATGGTTTTA
CTGATGATGTTATAATTTCAAGACGTGAAGAATTGATTAAAAATCAAGAAATTTCGCAAA
ATAAGAAAAAGAAGATGGCCTTTCTTGATGTTCTTTTACAATCGACAATCGAAGGAAAAC
CATTGTCAAATATGGACATAAGAGAAGAAGTTGATATTTTTATGTTTGAAGGGTTTGACA
CAACTAGCAGTGGAATTGCTTTTTGCCTTTACAATCTTGCTAAATATCCTGCAGTGCAGA
AAAAAGTTTTTGAAGAAATAATTAAAGTTATTGGTGCTGATAAAGACAAATCAGTGACAT
TGACAAATTTAAATGATTTAAAATATCTTGAAATGGTGATTAAAGAAACTTTAAGACTTT
ATCCTAGTGTTCCAGCTTATGGCAGAAAAATGGTTGAAAATGTTGAAATTAATGGAAAAT
TAATACCACGTGGAACTAATATTGGAATAGGACCCTATTTTATGGCACGCGATGCTTCTT
TATGGAAAAATCCTTTAGAATTCATTCCTGAAAGATTTAGCACAAATGAATCTCAATATC
ATCCTTTTCTTCATGTTCCGTTTTCTGCTGGTCCTAGAAATTGTGTAGGCCAAAAATTTG
CAATGCTTGAAATGAAAAGTGTTGTTTCAAAAATTCTTAGAAATTATGAAATTCAAGTTG
ATAGTGATTTTAAATTAGTTTTACTTTTTGAAGTTATTTTAAGACCAGAAAATGGAGTTT
TTTTGAAAATGATTAAAAGAAAATGA

>g15086.t11 Gene=g15086 Length=446
MFIGKKPSEILTIVEQLHREYGNVLCLMMGSQPEILLTSPEDVEVVLGSSKLIKKSDEYD
FMTDWLGTGLLIASGLKWFQKRKITTPAFHLQILDQFVEIFDKHSAIFVKNLAKSEGHSI
DVFQPITLCALDIICETAMGIEIHAQANSNSDYVRAVKEMSNLAMARSVNFFLRNKIIYK
FSSMKRRQDKLLKILHGFTDDVIISRREELIKNQEISQNKKKKMAFLDVLLQSTIEGKPL
SNMDIREEVDIFMFEGFDTTSSGIAFCLYNLAKYPAVQKKVFEEIIKVIGADKDKSVTLT
NLNDLKYLEMVIKETLRLYPSVPAYGRKMVENVEINGKLIPRGTNIGIGPYFMARDASLW
KNPLEFIPERFSTNESQYHPFLHVPFSAGPRNCVGQKFAMLEMKSVVSKILRNYEIQVDS
DFKLVLLFEVILRPENGVFLKMIKRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g15086.t11 Gene3D G3DSA:1.10.630.10 Cytochrome p450 2 446 1.7E-118
2 g15086.t11 PANTHER PTHR24291:SF143 CYTOCHROME P450 4D1-RELATED 4 445 8.4E-162
3 g15086.t11 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 4 445 8.4E-162
6 g15086.t11 PRINTS PR00463 E-class P450 group I signature 18 37 1.3E-27
5 g15086.t11 PRINTS PR00463 E-class P450 group I signature 244 261 1.3E-27
11 g15086.t11 PRINTS PR00385 P450 superfamily signature 255 272 6.6E-14
9 g15086.t11 PRINTS PR00463 E-class P450 group I signature 264 290 1.3E-27
8 g15086.t11 PRINTS PR00463 E-class P450 group I signature 309 327 1.3E-27
12 g15086.t11 PRINTS PR00385 P450 superfamily signature 310 321 6.6E-14
4 g15086.t11 PRINTS PR00463 E-class P450 group I signature 349 373 1.3E-27
7 g15086.t11 PRINTS PR00463 E-class P450 group I signature 383 393 1.3E-27
13 g15086.t11 PRINTS PR00385 P450 superfamily signature 384 393 6.6E-14
10 g15086.t11 PRINTS PR00463 E-class P450 group I signature 393 416 1.3E-27
14 g15086.t11 PRINTS PR00385 P450 superfamily signature 393 404 6.6E-14
1 g15086.t11 Pfam PF00067 Cytochrome P450 9 441 1.4E-113
16 g15086.t11 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 386 395 -
15 g15086.t11 SUPERFAMILY SSF48264 Cytochrome P450 9 445 6.94E-114

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed