Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 4d10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15086 g15086.t2 TSS g15086.t2 3854791 3854791
chr_4 g15086 g15086.t2 isoform g15086.t2 3854821 3855572
chr_4 g15086 g15086.t2 exon g15086.t2.exon1 3854821 3854930
chr_4 g15086 g15086.t2 cds g15086.t2.CDS1 3854821 3854930
chr_4 g15086 g15086.t2 exon g15086.t2.exon2 3855041 3855255
chr_4 g15086 g15086.t2 cds g15086.t2.CDS2 3855041 3855255
chr_4 g15086 g15086.t2 exon g15086.t2.exon3 3855357 3855572
chr_4 g15086 g15086.t2 cds g15086.t2.CDS3 3855357 3855571
chr_4 g15086 g15086.t2 TTS g15086.t2 3855622 3855622

Sequences

>g15086.t2 Gene=g15086 Length=541
ATGGAAACGTTTACTTTTGTACTTATTTTATTTTTTCTATTACTTGCTTGGTATTATAGT
GAATATCGATTTCGTTTCCAATCGATTTCTAAATTTCCGGGACCAAAAAGAATTCCGTTT
TTTGGCAATGCGTTAATGTTCATTGGTAAAAAGCCGTCAGAAATTTTGACAATTGTTGAG
CAATTACATCGTGAATATGGAAATGTTTTGTGCCTTATGATGGGTTCACAACCTGAAATA
TTATTAACAAGTCCCGAAGACGTTGAAGTTGTTTTGGGAAGTTCAAAATTGATTAAAAAA
TCTGATGAATATGATTTTATGACAGATTGGCTCGGCACTGGATTATTAATTGCAAGTGGA
CTAAAATGGTTTCAAAAAAGAAAAATAACCACGCCAGCTTTTCATCTTCAAATTCTTGAT
CAATTTGTTGAAATTTTTGACAAACATAGTGCAATTTTTGTAAAAAATCTCGCAAAGTCT
GAAGGTCATTCAATAGATGTTTTTCAGCCAATTACACTTTGCGCTCTAGACATTATCTGC
G

>g15086.t2 Gene=g15086 Length=180
METFTFVLILFFLLLAWYYSEYRFRFQSISKFPGPKRIPFFGNALMFIGKKPSEILTIVE
QLHREYGNVLCLMMGSQPEILLTSPEDVEVVLGSSKLIKKSDEYDFMTDWLGTGLLIASG
LKWFQKRKITTPAFHLQILDQFVEIFDKHSAIFVKNLAKSEGHSIDVFQPITLCALDIIC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g15086.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 15 180 5.3E-31
2 g15086.t2 PANTHER PTHR24291:SF143 CYTOCHROME P450 4D1-RELATED 7 180 4.6E-44
3 g15086.t2 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 7 180 4.6E-44
1 g15086.t2 Pfam PF00067 Cytochrome P450 33 180 5.9E-26
8 g15086.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
9 g15086.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
10 g15086.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 12 -
11 g15086.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 16 -
7 g15086.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 180 -
5 g15086.t2 SUPERFAMILY SSF48264 Cytochrome P450 22 180 4.19E-30
4 g15086.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed