Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15086 g15086.t4 TSS g15086.t4 3854791 3854791
chr_4 g15086 g15086.t4 isoform g15086.t4 3854821 3855659
chr_4 g15086 g15086.t4 exon g15086.t4.exon1 3854821 3854930
chr_4 g15086 g15086.t4 cds g15086.t4.CDS1 3854821 3854930
chr_4 g15086 g15086.t4 exon g15086.t4.exon2 3855041 3855306
chr_4 g15086 g15086.t4 cds g15086.t4.CDS2 3855041 3855306
chr_4 g15086 g15086.t4 exon g15086.t4.exon3 3855481 3855659
chr_4 g15086 g15086.t4 cds g15086.t4.CDS3 3855481 3855494
chr_4 g15086 g15086.t4 TTS g15086.t4 3855622 3855622

Sequences

>g15086.t4 Gene=g15086 Length=555
ATGGAAACGTTTACTTTTGTACTTATTTTATTTTTTCTATTACTTGCTTGGTATTATAGT
GAATATCGATTTCGTTTCCAATCGATTTCTAAATTTCCGGGACCAAAAAGAATTCCGTTT
TTTGGCAATGCGTTAATGTTCATTGGTAAAAAGCCGTCAGAAATTTTGACAATTGTTGAG
CAATTACATCGTGAATATGGAAATGTTTTGTGCCTTATGATGGGTTCACAACCTGAAATA
TTATTAACAAGTCCCGAAGACGTTGAAGTTGTTTTGGGAAGTTCAAAATTGATTAAAAAA
TCTGATGAATATGATTTTATGACAGGTAAAAATTGGAAAAAAATTTTTTTGAAATATTTT
AATTTTATTTTTAAAATGCAATTTTTGTAAAAAATCTCGCAAAGTCTGAAGGTCATTCAA
TAGATGTTTTTCAGCCAATTACACTTTGCGCTCTAGACATTATCTGCGGTAAAAAATTTC
ATCATCATTTAAATGATTAAATTACTTTGTTTATAAACAAAATCATCTTTGTCTTATCAT
TTCATTTCTTTATTT

>g15086.t4 Gene=g15086 Length=129
METFTFVLILFFLLLAWYYSEYRFRFQSISKFPGPKRIPFFGNALMFIGKKPSEILTIVE
QLHREYGNVLCLMMGSQPEILLTSPEDVEVVLGSSKLIKKSDEYDFMTGKNWKKIFLKYF
NFIFKMQFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g15086.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 15 123 2.8E-12
2 g15086.t4 PANTHER PTHR24291:SF106 CYTOCHROME P450 4G1-RELATED 4 107 1.3E-13
3 g15086.t4 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 4 107 1.3E-13
1 g15086.t4 Pfam PF00067 Cytochrome P450 33 109 1.6E-9
8 g15086.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
9 g15086.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
10 g15086.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 12 -
11 g15086.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 16 -
7 g15086.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 129 -
5 g15086.t4 SUPERFAMILY SSF48264 Cytochrome P450 22 108 8.77E-14
4 g15086.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed