Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4d1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15086 g15086.t9 TSS g15086.t9 3854791 3854791
chr_4 g15086 g15086.t9 isoform g15086.t9 3854821 3856861
chr_4 g15086 g15086.t9 exon g15086.t9.exon1 3854821 3854930
chr_4 g15086 g15086.t9 exon g15086.t9.exon2 3855041 3855255
chr_4 g15086 g15086.t9 exon g15086.t9.exon3 3855357 3855572
chr_4 g15086 g15086.t9 TTS g15086.t9 3855622 3855622
chr_4 g15086 g15086.t9 exon g15086.t9.exon4 3855663 3855732
chr_4 g15086 g15086.t9 exon g15086.t9.exon5 3855800 3856075
chr_4 g15086 g15086.t9 cds g15086.t9.CDS1 3855859 3856075
chr_4 g15086 g15086.t9 exon g15086.t9.exon6 3856133 3856372
chr_4 g15086 g15086.t9 cds g15086.t9.CDS2 3856133 3856372
chr_4 g15086 g15086.t9 exon g15086.t9.exon7 3856475 3856861
chr_4 g15086 g15086.t9 cds g15086.t9.CDS3 3856475 3856653

Sequences

>g15086.t9 Gene=g15086 Length=1514
ATGGAAACGTTTACTTTTGTACTTATTTTATTTTTTCTATTACTTGCTTGGTATTATAGT
GAATATCGATTTCGTTTCCAATCGATTTCTAAATTTCCGGGACCAAAAAGAATTCCGTTT
TTTGGCAATGCGTTAATGTTCATTGGTAAAAAGCCGTCAGAAATTTTGACAATTGTTGAG
CAATTACATCGTGAATATGGAAATGTTTTGTGCCTTATGATGGGTTCACAACCTGAAATA
TTATTAACAAGTCCCGAAGACGTTGAAGTTGTTTTGGGAAGTTCAAAATTGATTAAAAAA
TCTGATGAATATGATTTTATGACAGATTGGCTCGGCACTGGATTATTAATTGCAAGTGGA
CTAAAATGGTTTCAAAAAAGAAAAATAACCACGCCAGCTTTTCATCTTCAAATTCTTGAT
CAATTTGTTGAAATTTTTGACAAACATAGTGCAATTTTTGTAAAAAATCTCGCAAAGTCT
GAAGGTCATTCAATAGATGTTTTTCAGCCAATTACACTTTGCGCTCTAGACATTATCTGC
GAGACTGCTATGGGAATTGAAATTCACGCTCAGGCAAATTCAAATTCTGATTATGTTCGT
GCTGTTAAAGACAATGGCAAGAAGCGTCAATTTTTTCTTAAGAAATAAAATTATTTATAA
ATTTTCATCAATGAAAAGACGACAAGATAAATTGTTAAAAATTTTACATGGTTTTACTGA
TGATGTTATAATTTCAAGACGTGAAGAATTGATTAAAAATCAAGAAATTTCGCAAAATAA
GAAAAAGAAGATGGCCTTTCTTGATGTTCTTTTACAATCGACAATCGAAGGAAAACCATT
GTCAAATATGGACATAAGAGAAGAAGTTGATATTTTTATGTTTGAAGGGTTTGACACAAC
TAGCAGTGGAATTGCTTTTTGCCTTTACAATCTTGCTAAATATCCTGCAGTGCAGAAAAA
AGTTTTTGAAGAAATAATTAAAGTTATTGGTGCTGATAAAGACAAATCAGTGACATTGAC
AAATTTAAATGATTTAAAATATCTTGAAATGGTGATTAAAGAAACTTTAAGACTTTATCC
TAGTGTTCCAGCTTATGGCAGAAAAATGGTTGAAAATGTTGAAATTAATGGAAAATTAAT
ACCACGTGGAACTAATATTGGAATAGGACCCTATTTTATGGCACGCGATGCTTCTTTATG
GAAAAATCCTTTAGAATTCATTCCTGAAAGATTTAGCACAAATGAATCTCAATATCATCC
TTTTCTTCATGTTCCGTTTTCTGCTGGTAAGTTTAAAACTTTCTAAAAAATAATTTTCAA
ACTAATTTTATATTTTAGGTCCTAGAAATTGTGTAGGCCAAAAATTTGCAATGCTTGAAA
TGAAAAGTGTTGTTTCAAAAATTCTTAGAAATTATGAAATTCAAGTTGATAGTGATTTTA
AATTAGTTTTACTTTTTGAAGTTATTTTAAGACCAGAAAATGGAGTTTTTTTGAAAATGA
TTAAAAGAAAATGA

>g15086.t9 Gene=g15086 Length=211
MKRRQDKLLKILHGFTDDVIISRREELIKNQEISQNKKKKMAFLDVLLQSTIEGKPLSNM
DIREEVDIFMFEGFDTTSSGIAFCLYNLAKYPAVQKKVFEEIIKVIGADKDKSVTLTNLN
DLKYLEMVIKETLRLYPSVPAYGRKMVENVEINGKLIPRGTNIGIGPYFMARDASLWKNP
LEFIPERFSTNESQYHPFLHVPFSAGKFKTF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g15086.t9 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 208 0e+00
2 g15086.t9 PANTHER PTHR24291:SF143 CYTOCHROME P450 4D1-RELATED 2 206 0e+00
3 g15086.t9 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 2 206 0e+00
4 g15086.t9 PRINTS PR00463 E-class P450 group I signature 61 78 0e+00
10 g15086.t9 PRINTS PR00385 P450 superfamily signature 72 89 3e-07
8 g15086.t9 PRINTS PR00463 E-class P450 group I signature 81 107 0e+00
5 g15086.t9 PRINTS PR00463 E-class P450 group I signature 126 144 0e+00
11 g15086.t9 PRINTS PR00385 P450 superfamily signature 127 138 3e-07
7 g15086.t9 PRINTS PR00463 E-class P450 group I signature 166 190 0e+00
6 g15086.t9 PRINTS PR00463 E-class P450 group I signature 200 210 0e+00
9 g15086.t9 PRINTS PR00385 P450 superfamily signature 201 210 3e-07
1 g15086.t9 Pfam PF00067 Cytochrome P450 2 207 0e+00
12 g15086.t9 SUPERFAMILY SSF48264 Cytochrome P450 2 207 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed