General information for g15095.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 23.
Parent gene
- The parent gene g15095 is located on chr_4: 3888165..3891152 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15095 | g15095.t4 | TSS | g15095.t4 | 3888046 | 3888046 |
| chr_4 | g15095 | g15095.t4 | isoform | g15095.t4 | 3888055 | 3891152 |
| chr_4 | g15095 | g15095.t4 | exon | g15095.t4.exon1 | 3888055 | 3888158 |
| chr_4 | g15095 | g15095.t4 | cds | g15095.t4.CDS1 | 3888055 | 3888158 |
| chr_4 | g15095 | g15095.t4 | exon | g15095.t4.exon2 | 3888322 | 3889083 |
| chr_4 | g15095 | g15095.t4 | cds | g15095.t4.CDS2 | 3888322 | 3889083 |
| chr_4 | g15095 | g15095.t4 | exon | g15095.t4.exon3 | 3889904 | 3890875 |
| chr_4 | g15095 | g15095.t4 | cds | g15095.t4.CDS3 | 3889904 | 3890495 |
| chr_4 | g15095 | g15095.t4 | exon | g15095.t4.exon4 | 3890936 | 3891152 |
| chr_4 | g15095 | g15095.t4 | TTS | g15095.t4 | 3891182 | 3891182 |
Sequences
>g15095.t4 Gene=g15095 Length=2055
ATGAGCTGCGTTGAGGTAAAGAACGTTTTTTTCAGCTACAACAACGGAGATAAAGAGGAA
AAAATTCTTAATGGAATAAATATGAGTGTTGATCGTGGCACAATCTACACATTGATTGGT
GCATCGGGTTGTGGAAAAACAACACTTTTAAGTTGTCTCATGTGCATTCAAAAACCACAA
AGTGGAGAACTTAAAGTTTTCAATCAAAAATCAGCAAAAATTCCAAAATTAATTGGTTTT
ATGCCACAACAAAATTCTTTAGTTGCCGAACTTACAATCAATGAAACACTTCAATATTTT
GGGCATCTTTATGAAATGAAACAGGAAATTTTTGATGAGCGCTTTGAAATGATTTCCGAA
CTTCTCGATTTACCGGATAAAAATTTACAAATTCGTGACTTATCAGGTGGCGAACAGCGA
AGAATTTCATTGGCAGCAACAATAATTCATGATCCAAAATTATTGATTCTTGATGAGCCA
ACTGTTGGACTTGATTTTCTACTTAGAGAAAAAATTTGGGAATTTTTGTTTCAAAAAACA
ACAAATGATAATGTCACGGCAATAATCACAACACATTACATTAGTGAAGCTGCAAATGCT
CATCGTTGTGGTTTTATGAGAAATGGAATTTTAATTGCAGAAGATTCGCCAAATGCAATT
TTAGATAAACTTAATATTGAAAGTCTTGATGAAGCTTTTTACCATTTGTGTACCAAAAAA
GAAAATGAAAATCAAATAATTCTTGAAAGTGAAAATTTTGGAAGAGAACAAAATGAAGAG
AAAATTGAAGAACAAAAAATTTTTAGACCGAAAATTATGAAAGGATTGTTGATTAAGGAA
TTTCATAGGATACGACGACAGCCACTTGAAATTTTCATCATTTTTATCATGCCAGTTTTT
CAATTCTACCTTTTTTTAATTGCCATTGGTGCAATTCCAAATGACTTAATTCTTGGCATT
GTCAATAATGAAGATCAAAACTGCAATAAATACACAATAAATAATTCAATACCAATAGAT
AAATGTTCAGAAGCTACATTTTCATGTGAATTTACAAACCATGTAATTAACAACAATTTT
CAAAAAGTTCTTTACAACACACATCATCAAGCATTGCATGATTTCAAAGAAAGCAATCTT
TTTGGTTTTGTTGAAATTCCAAAAAATTTTACTCAAATAATTTTTGATGAAACAGAAAAC
AGAACTGGAGCAGTTGAAGTTTTTTTGGACAATTCAAAATATCATTTATTGCTGTACACA
AAGTCAAAAATTATGTCAGCATTTTTGGATTTCATGGATGAACTTGCTGGTCGTTGTAAC
GTTAATGAATTAATTAGAGGCAGACCAATAAAATTTGAAGAACTCTATGCACCATTAAGC
TTCGATATTAGGACAACTTTGATGACTGCAATTATGCTATCGTTGAGTATTTTTTTCATT
TTTCTTAAAATTTATTAATAAATTTTTATTTTTAGTTTACCATTCACAATGACAAATATT
TTTGCACTTCTTATCATCTCTGACACTCGAATTGCTGGAGTTTGGAATCGGACACTTTTA
TGTGGAGTGAAACTAACAGAAATTATCTTAGCAAATGCTATAGAATGTATTTTTATATCA
ATAGTCATTGCTGCATCAATGATTATTGGACAAGATTTTATTTTTGGTGCAGAAGTTCTT
GGCAGCAAATTTCTTGTTTTCAGCTTAATCACTGGAATTTGCATAGTTGGTTTTATGATG
GGATTTTTCATTTCAATTTTATGCGATAAATTTCAAGCGTCATCTGGTTTGGGACAATTG
ATTACTATTCTTACTGTTTTCACAACTGGATTAATTTGGCCAGTTGAATCACTTTCACCA
TGGATAATTCCAATTTCTTACATTCATCCATTGACATTTCCATTTATTGCAAATAGAAAT
ATTATTTTAAAAGGTGTTGAAATTTGTCATTCAAGTGTCATTTTAGGATTTTTTGTTATT
AATGCTTGGATTATTGTTCTTGCTGTTTCTTCTTACTTTTTGTTAAAGACTAAAAAGTTT
TCTAGAAATTTTTAA
>g15095.t4 Gene=g15095 Length=485
MSCVEVKNVFFSYNNGDKEEKILNGINMSVDRGTIYTLIGASGCGKTTLLSCLMCIQKPQ
SGELKVFNQKSAKIPKLIGFMPQQNSLVAELTINETLQYFGHLYEMKQEIFDERFEMISE
LLDLPDKNLQIRDLSGGEQRRISLAATIIHDPKLLILDEPTVGLDFLLREKIWEFLFQKT
TNDNVTAIITTHYISEAANAHRCGFMRNGILIAEDSPNAILDKLNIESLDEAFYHLCTKK
ENENQIILESENFGREQNEEKIEEQKIFRPKIMKGLLIKEFHRIRRQPLEIFIIFIMPVF
QFYLFLIAIGAIPNDLILGIVNNEDQNCNKYTINNSIPIDKCSEATFSCEFTNHVINNNF
QKVLYNTHHQALHDFKESNLFGFVEIPKNFTQIIFDETENRTGAVEVFLDNSKYHLLLYT
KSKIMSAFLDFMDELAGRCNVNELIRGRPIKFEELYAPLSFDIRTTLMTAIMLSLSIFFI
FLKIY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g15095.t4 | CDD | cd03230 | ABC_DR_subfamily_A | 4 | 211 | 2.57177E-50 |
| 7 | g15095.t4 | Gene3D | G3DSA:3.40.50.300 | - | 2 | 276 | 1.1E-55 |
| 2 | g15095.t4 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 1 | 245 | 1.1E-109 |
| 4 | g15095.t4 | PANTHER | PTHR43038:SF2 | RH61964P | 1 | 245 | 1.1E-109 |
| 3 | g15095.t4 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 256 | 479 | 1.1E-109 |
| 5 | g15095.t4 | PANTHER | PTHR43038:SF2 | RH61964P | 256 | 479 | 1.1E-109 |
| 1 | g15095.t4 | Pfam | PF00005 | ABC transporter | 23 | 161 | 9.3E-27 |
| 8 | g15095.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 290 | - |
| 12 | g15095.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 291 | 312 | - |
| 10 | g15095.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 313 | 462 | - |
| 11 | g15095.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 463 | 482 | - |
| 9 | g15095.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 483 | 485 | - |
| 16 | g15095.t4 | ProSitePatterns | PS00211 | ABC transporters family signature. | 134 | 148 | - |
| 18 | g15095.t4 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 4 | 233 | 20.035 |
| 17 | g15095.t4 | SMART | SM00382 | AAA_5 | 32 | 214 | 6.1E-8 |
| 6 | g15095.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 224 | 8.46E-51 |
| 15 | g15095.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 291 | 313 | - |
| 14 | g15095.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 465 | 482 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K09817 (zinc transport system ATP-binding protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed