Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ABC transporter G family member 20.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15095 g15095.t5 TSS g15095.t5 3888046 3888046
chr_4 g15095 g15095.t5 isoform g15095.t5 3888165 3889081
chr_4 g15095 g15095.t5 exon g15095.t5.exon1 3888165 3889081
chr_4 g15095 g15095.t5 cds g15095.t5.CDS1 3888242 3889081
chr_4 g15095 g15095.t5 TTS g15095.t5 3888931 3888931

Sequences

>g15095.t5 Gene=g15095 Length=917
TTTTTTAAATTGAGATTTTTCAAATAAGGAGAAAATAAAAAATTCTGATTCTTTAATAAA
TTTCAAGGTTGATTTTGATGATCAAAAGTACCAAAAAAACCCAAACAAAACTTGTTTATA
AAAATTGTCCTAGGTCAAGAATTTTTTTATTTTACAGCTACACATTGATTGGTGCATCGG
GTTGTGGAAAAACAACACTTTTAAGTTGTCTCATGTGCATTCAAAAACCACAAAGTGGAG
AACTTAAAGTTTTCAATCAAAAATCAGCAAAAATTCCAAAATTAATTGGTTTTATGCCAC
AACAAAATTCTTTAGTTGCCGAACTTACAATCAATGAAACACTTCAATATTTTGGGCATC
TTTATGAAATGAAACAGGAAATTTTTGATGAGCGCTTTGAAATGATTTCCGAACTTCTCG
ATTTACCGGATAAAAATTTACAAATTCGTGACTTATCAGGTGGCGAACAGCGAAGAATTT
CATTGGCAGCAACAATAATTCATGATCCAAAATTATTGATTCTTGATGAGCCAACTGTTG
GACTTGATTTTCTACTTAGAGAAAAAATTTGGGAATTTTTGTTTCAAAAAACAACAAATG
ATAATGTCACGGCAATAATCACAACACATTACATTAGTGAAGCTGCAAATGCTCATCGTT
GTGGTTTTATGAGAAATGGAATTTTAATTGCAGAAGATTCGCCAAATGCAATTTTAGATA
AACTTAATATTGAAAGTCTTGATGAAGCTTTTTACCATTTGTGTACCAAAAAAGAAAATG
AAAATCAAATAATTCTTGAAAGTGAAAATTTTGGAAGAGAACAAAATGAAGAGAAAATTG
AAGAACAAAAAATTTTTAGACCGAAAATTATGAAAGGATTGTTGATTAAGGAATTTCATA
GGATACGACGACAGCCA

>g15095.t5 Gene=g15095 Length=280
MIKSTKKTQTKLVYKNCPRSRIFLFYSYTLIGASGCGKTTLLSCLMCIQKPQSGELKVFN
QKSAKIPKLIGFMPQQNSLVAELTINETLQYFGHLYEMKQEIFDERFEMISELLDLPDKN
LQIRDLSGGEQRRISLAATIIHDPKLLILDEPTVGLDFLLREKIWEFLFQKTTNDNVTAI
ITTHYISEAANAHRCGFMRNGILIAEDSPNAILDKLNIESLDEAFYHLCTKKENENQIIL
ESENFGREQNEEKIEEQKIFRPKIMKGLLIKEFHRIRRQP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15095.t5 Gene3D G3DSA:3.40.50.300 - 27 268 7.9E-46
2 g15095.t5 PANTHER PTHR43038 ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 10 237 1.5E-75
3 g15095.t5 PANTHER PTHR43038:SF2 RH61964P 10 237 1.5E-75
1 g15095.t5 Pfam PF00005 ABC transporter 28 153 1.7E-23
7 g15095.t5 ProSitePatterns PS00211 ABC transporters family signature. 126 140 -
9 g15095.t5 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 8 225 15.393
8 g15095.t5 SMART SM00382 AAA_5 24 206 8.4E-6
4 g15095.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 28 216 1.24E-43
6 g15095.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 43 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed