Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sulfotransferase family cytosolic 1B member 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15150 g15150.t8 TSS g15150.t8 4135952 4135952
chr_4 g15150 g15150.t8 isoform g15150.t8 4136247 4137637
chr_4 g15150 g15150.t8 exon g15150.t8.exon1 4136247 4136319
chr_4 g15150 g15150.t8 cds g15150.t8.CDS1 4136265 4136319
chr_4 g15150 g15150.t8 exon g15150.t8.exon2 4136384 4136667
chr_4 g15150 g15150.t8 cds g15150.t8.CDS2 4136384 4136667
chr_4 g15150 g15150.t8 exon g15150.t8.exon3 4137262 4137385
chr_4 g15150 g15150.t8 cds g15150.t8.CDS3 4137262 4137385
chr_4 g15150 g15150.t8 exon g15150.t8.exon4 4137444 4137637
chr_4 g15150 g15150.t8 cds g15150.t8.CDS4 4137444 4137637
chr_4 g15150 g15150.t8 TTS g15150.t8 4137694 4137694

Sequences

>g15150.t8 Gene=g15150 Length=675
GGTTGATTTTGAACGATTATGACGTCGAAAAAGCAAAATCAGCTGATACTTACAATCGAG
CTCAATGGTTTGATTTCTTCAATGTTGTTCATAAACTTCAAGGTGTCGATGCTGATTATA
TGGACAAAAAGCCACGCCCACGTATTTTTCAAAACCCATTTACCAGTTCAATTTCTTCCT
GATCAAATTTGGACCGTGAAACCAAAAATTATTCACATTCATCGAGATGTCAAAGATGTC
GCCATTTCGCTCTATCACTTACGTAAAAATTCATTGCACGATGATGTTGGAACAATGGAA
GAACATTTTGAAGAAATTTTGAATGATAGAACTTGGTATACACCATATAGAGAACATTAT
GAAGAACTTCTTGCTGATAAAGCTGGAGTTATCAAGCAAACAGCAAAATTCTTAAATACA
CCAATCACTGAAGAACAAGTCCAGAAGCTTATTGATCATTCTAAATTTGAGAAAATGCAA
AAGAACAAAATGACAAACATGCAACACTATCATGAACTCTTCAATCAACTTTCGAATGAC
AATAAGCCAACTGATAAATTCATTCGCAAGGGAATTGTTGGAGACCATAAGAATGCAATG
AGTGAAGAAACCATCAAGAGATTCGATGAATGGTGGGCACAAAGAACAACACTTAAACCT
GGATACAACAAATAA

>g15150.t8 Gene=g15150 Length=218
MTSKKQNQLILTIELNGLISSMLFINFKVSMLIIWTKSHAHVFFKTHLPVQFLPDQIWTV
KPKIIHIHRDVKDVAISLYHLRKNSLHDDVGTMEEHFEEILNDRTWYTPYREHYEELLAD
KAGVIKQTAKFLNTPITEEQVQKLIDHSKFEKMQKNKMTNMQHYHELFNQLSNDNKPTDK
FIRKGIVGDHKNAMSEETIKRFDEWWAQRTTLKPGYNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g15150.t8 Gene3D G3DSA:3.40.50.300 - 21 213 8.4E-45
3 g15150.t8 PANTHER PTHR11783 SULFOTRANSFERASE SULT 33 114 8.7E-38
5 g15150.t8 PANTHER PTHR11783:SF180 GH11818P-RELATED 33 114 8.7E-38
2 g15150.t8 PANTHER PTHR11783 SULFOTRANSFERASE SULT 113 216 8.7E-38
4 g15150.t8 PANTHER PTHR11783:SF180 GH11818P-RELATED 113 216 8.7E-38
1 g15150.t8 Pfam PF00685 Sulfotransferase domain 113 209 4.0E-18
9 g15150.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
11 g15150.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 35 -
10 g15150.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 36 218 -
7 g15150.t8 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 32 209 5.31E-42
6 g15150.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008146 sulfotransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed