General information for g15159.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15159 is located on chr_4: 4167215..4167708 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15159 | g15159.t1 | TSS | g15159.t1 | 4166925 | 4166925 |
| chr_4 | g15159 | g15159.t1 | isoform | g15159.t1 | 4167013 | 4167708 |
| chr_4 | g15159 | g15159.t1 | exon | g15159.t1.exon1 | 4167013 | 4167127 |
| chr_4 | g15159 | g15159.t1 | cds | g15159.t1.CDS1 | 4167013 | 4167127 |
| chr_4 | g15159 | g15159.t1 | exon | g15159.t1.exon2 | 4167194 | 4167708 |
| chr_4 | g15159 | g15159.t1 | cds | g15159.t1.CDS2 | 4167194 | 4167708 |
| chr_4 | g15159 | g15159.t1 | TTS | g15159.t1 | 4167952 | 4167952 |
Sequences
>g15159.t1 Gene=g15159 Length=630
ATGCAGAGTATGCGAAATGAAAGTGGATCACAACAGTATGAAATTGCAGCAACTCGTCGT
CCTGACGGTTCATGGCGAAAAGCAAGACGCGTTCGTCCCGGTTTTGTCCCACAAGAGGAA
GTTCCATTATACACACCTAAAGGTAAACGAATAGCACAAGCAAATTCAGGCTATCCACCA
GGATGGCATCCAGATTTGGCATCATCAAAAAATGTTAAAAGTACAAAACCACAATCACAA
TTGAAAGAGCAGTCACTGCAAAAGCAACAACAACAGCCATCACAGCGAGCTAATGAGCAA
GCACCAATAAAAGTGCTAACAAATCCTAGACAAACAACTACTAAAGTAACTAGTAGCATC
GATGAAGTGACTGATGCAATGCAAAATACGCTTAAAATTCGCGAGGATGTGCTGGAATTA
TCGAAGCGTTTAAAACGATTGCGGAGACGTTTGAGAGAATTGGAAATTTTGGAAGAGAAA
ATTAAAAGTGGCGAAATTACAAAACCACAAAAAGATCAAGTTGAAAAAATTGCAAGACGA
AAGGAACTGGAAAAGGAAATTGATGAATTGGAAAAACAACGCGAGGAACTTAAAGCTCAA
GGCTTTAAATGCAATGATGATGAATCGTGA
>g15159.t1 Gene=g15159 Length=209
MQSMRNESGSQQYEIAATRRPDGSWRKARRVRPGFVPQEEVPLYTPKGKRIAQANSGYPP
GWHPDLASSKNVKSTKPQSQLKEQSLQKQQQQPSQRANEQAPIKVLTNPRQTTTKVTSSI
DEVTDAMQNTLKIREDVLELSKRLKRLRRRLRELEILEEKIKSGEITKPQKDQVEKIARR
KELEKEIDELEKQREELKAQGFKCNDDES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g15159.t1 | Coils | Coil | Coil | 137 | 164 | - |
| 9 | g15159.t1 | Coils | Coil | Coil | 173 | 207 | - |
| 5 | g15159.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 104 | - |
| 8 | g15159.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - |
| 6 | g15159.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - |
| 7 | g15159.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 104 | - |
| 2 | g15159.t1 | PANTHER | PTHR22959 | PYM PROTEIN | 10 | 195 | 3.5E-29 |
| 1 | g15159.t1 | Pfam | PF09282 | Mago binding | 15 | 37 | 1.0E-12 |
| 4 | g15159.t1 | SMART | SM01273 | Mago_bind_2 | 11 | 37 | 2.2E-11 |
| 3 | g15159.t1 | SUPERFAMILY | SSF101931 | Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain | 9 | 37 | 1.31E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1903259 | exon-exon junction complex disassembly | BP |
KEGG
Orthology
- This transcript has been annotated with K14294 (partner of Y14 and mago)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
