Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 305a1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15164 g15164.t1 isoform g15164.t1 4193720 4195672
chr_4 g15164 g15164.t1 exon g15164.t1.exon1 4193720 4193928
chr_4 g15164 g15164.t1 cds g15164.t1.CDS1 4193720 4193928
chr_4 g15164 g15164.t1 exon g15164.t1.exon2 4194184 4194518
chr_4 g15164 g15164.t1 cds g15164.t1.CDS2 4194184 4194518
chr_4 g15164 g15164.t1 exon g15164.t1.exon3 4195296 4195672
chr_4 g15164 g15164.t1 cds g15164.t1.CDS3 4195296 4195672
chr_4 g15164 g15164.t1 TSS g15164.t1 NA NA
chr_4 g15164 g15164.t1 TTS g15164.t1 NA NA

Sequences

>g15164.t1 Gene=g15164 Length=921
ATGGGAACACGTTTAGGTATCACTTCCAGCGATGGTCGCAATTGGCATGAACAAAGAAGT
TTTGTTCTTCGTCAACTTCGAAATGTTGGTTTTGGAAAGACAAAAATGGAAGAGCAAATA
CATGCAGAACTCAATGAAATTTTAGATATTATCAAAAGCAAGAAAGACACTCCAATTTGG
CCAGGTGAAAGCAGTTTGATATCAAACAACGATGACAAAACAGGTGATGATGTCATTTAT
GCTTACATCAAGGAAATGAATGCACAAAAAGATAGAGAAGATACAACATTCAAACTTGAA
CAGCTTGTTTTCATCATTTTGGACATTTTTATAGCTGGTGCAAGTTCAACAGCAATTACA
ATTGATTTAGCATTGATGTCAATGTTGTTGTATCCAGAAATTCAAAGAAAAATTCATAAA
GAAATTGATGAAGTCCTTGGTGAAAATAGTGAAATGCCGAGATATATTGATAGAAATAGA
ATGCCATATACCGAAGCTGTATTGCTTGAAGTTCAACGAATGTATAGTGTTGCTTCTGTA
TCAGGACCAAGAAGAACAATGAAAGCAACAACTTTAGGTGGTTACGATCTTCCAAAATAT
ACAACAATTTTAATCGGTCTTGCAACAGTTCACAAAGATGAAGATTATTGGAAAGATCCA
CACAACTTCCGTCCAGAAAGATTTTTAGATGAAAATAATAAGATCTATAATACCGAAAGA
GTTTTACCATTCGGTGCCGGGAGAAGAAAGTGCTTGGGTGATCAACTTGCTAGAGCTGCA
CTTTTTACATTTTTTGTTGGAATTTTGAAAGAATTTTCATTAGAAAAATGTGAAAGTGCG
TTGCCTAGCACAGATTTAGTACCAGGATTATTGACAAGTCCAAAACCCTATAAAGCTTAC
TTTAGAAAGAGAAAAATTTGA

>g15164.t1 Gene=g15164 Length=306
MGTRLGITSSDGRNWHEQRSFVLRQLRNVGFGKTKMEEQIHAELNEILDIIKSKKDTPIW
PGESSLISNNDDKTGDDVIYAYIKEMNAQKDREDTTFKLEQLVFIILDIFIAGASSTAIT
IDLALMSMLLYPEIQRKIHKEIDEVLGENSEMPRYIDRNRMPYTEAVLLEVQRMYSVASV
SGPRRTMKATTLGGYDLPKYTTILIGLATVHKDEDYWKDPHNFRPERFLDENNKIYNTER
VLPFGAGRRKCLGDQLARAALFTFFVGILKEFSLEKCESALPSTDLVPGLLTSPKPYKAY
FRKRKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g15164.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 66 5.2E-9
18 g15164.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 67 306 5.9E-76
2 g15164.t1 PANTHER PTHR24303:SF13 CYTOCHROME P450 305A1-RELATED 1 64 4.1E-107
4 g15164.t1 PANTHER PTHR24303 HEME-BINDING MONOOXYGENASE FAMILY 1 64 4.1E-107
3 g15164.t1 PANTHER PTHR24303:SF13 CYTOCHROME P450 305A1-RELATED 71 304 4.1E-107
5 g15164.t1 PANTHER PTHR24303 HEME-BINDING MONOOXYGENASE FAMILY 71 304 4.1E-107
8 g15164.t1 PRINTS PR00463 E-class P450 group I signature 101 118 4.8E-40
14 g15164.t1 PRINTS PR00385 P450 superfamily signature 112 129 1.8E-10
11 g15164.t1 PRINTS PR00463 E-class P450 group I signature 121 147 4.8E-40
7 g15164.t1 PRINTS PR00463 E-class P450 group I signature 165 183 4.8E-40
12 g15164.t1 PRINTS PR00385 P450 superfamily signature 166 177 1.8E-10
9 g15164.t1 PRINTS PR00463 E-class P450 group I signature 206 230 4.8E-40
6 g15164.t1 PRINTS PR00463 E-class P450 group I signature 241 251 4.8E-40
15 g15164.t1 PRINTS PR00385 P450 superfamily signature 242 251 1.8E-10
10 g15164.t1 PRINTS PR00463 E-class P450 group I signature 251 274 4.8E-40
13 g15164.t1 PRINTS PR00385 P450 superfamily signature 251 262 1.8E-10
1 g15164.t1 Pfam PF00067 Cytochrome P450 73 299 5.2E-64
20 g15164.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 101 -
21 g15164.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 102 131 -
19 g15164.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 132 306 -
23 g15164.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 244 253 -
16 g15164.t1 SUPERFAMILY SSF48264 Cytochrome P450 6 304 1.03E-73
22 g15164.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 102 124 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values