Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytosolic non-specific dipeptidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15166 g15166.t10 TSS g15166.t10 4212692 4212692
chr_4 g15166 g15166.t10 isoform g15166.t10 4212807 4214744
chr_4 g15166 g15166.t10 exon g15166.t10.exon1 4212807 4212841
chr_4 g15166 g15166.t10 exon g15166.t10.exon2 4212945 4213179
chr_4 g15166 g15166.t10 exon g15166.t10.exon3 4213523 4213908
chr_4 g15166 g15166.t10 exon g15166.t10.exon4 4213993 4214744
chr_4 g15166 g15166.t10 cds g15166.t10.CDS1 4214034 4214744
chr_4 g15166 g15166.t10 TTS g15166.t10 4214803 4214803

Sequences

>g15166.t10 Gene=g15166 Length=1408
ATGAGTTTGCCGGAAAAATTGGAGAAATTGTTTGGTTATATCGATCAAAACAAAGCAAAA
TACATTGAAACTTTGACTGAAGCTGTTGCGATAAAATCAGTATCAGCTTGGCCTAATTGT
CGAAATGAATGTCAACGTATGATTGATTTTGCTCAGAAAAAAATGGAAGCACTTGGAATC
AAGTGTGAACAAGTCGATATTGGCATGCAAACTTTACCTGATGGAACAACTTTGAAACTT
CCCAATGTTGTAATGGGAGTACTTGGAAATGATCCAGCAAAGAAGACAATTGTTGTTTAT
GGACATTTAGATGTTCAACCAGCATTGAAAGAAGACGGTTGGGACACTGATCCTTTTATT
CTCACTTTAAAGGACGGTAAATTATATGGTCGTGGTTCTAGTGACGACAAAGGTCCAGTA
TTAGGCTGGCTTAATGCAATTGAGGCTTATCAAAAGTTGGGACTTGATGTGCCAGTGAAT
TTGAAATTTGTTTTTGAAGGAATGGAAGAAAGTGGCTCAGAAGGTCTCGATGATCTTTTG
GTTGCTCGCAAAGATTGGTTCAAAGATGTCGATTATGTTTGCATTAGTGACAATTATTGG
TTGGGCAATCAACATCCTTGCATCACTTATGGTCTGAGAGGCATTTGCTACTTTGGATTT
GCATTCAGGTGTCTTTGGCGGTGCTGTACATGAAGCTATGACTGATTTGATTCATTTAAT
GTCAACACTTGTTGATGTAAATGGAAAAATCTTAATTCCTGGAATTTATGATGATGTTGC
TCCATTGCTTCCAAATGAAAATGAAATTTATGAAAAAATTTCATTCGATGTTGAAGCTTT
CCGTCAAAGTGTTGGTGCACCAGGCAAATTGATGCATGACTCAAAAACTAAATTGCTTCA
GCACAGATGGCGTTATCCAAGTCTTTCATTGCATGGTGTTGAAGGTGCTTTCTATGAGCC
TGGACAAAAGACTGTAATTCCAAGAAAAGTAATTGGAAAATTCTCAATTCGTGCTGTCCC
GAATCAAGAGCCAGAAAAGATTGAAAAACTTGTTGTTGATTATGTGACTCGAAAATTTGC
TGAATTAAAAAGCCCAAATGAAATTAAATGTTATATGGCTCATGGTGGTCGACCATGGAC
AGAAAATCCTAACCATGAGCATTATCAAGCTGCTGTTCGTGCAACTAAGCATGTCTATAA
AGTAGAGCCTGATATGACACGTGAAGGTGGGTCAATTCCGGTCACTCTTACTTTCCAAGA
AGTTTCTGGAAAGAATGTACTGTTGCTGCCCATGGGATGTGGTGACGATGGCGCTCACAG
CCAAAACGAGAAAATTGATGTTCGCAATTATATTGAAGGAAGCAAATTACTTGGTGCTTA
CTTGTATGAAGTTGCTCAAATTCAATAA

>g15166.t10 Gene=g15166 Length=236
MTDLIHLMSTLVDVNGKILIPGIYDDVAPLLPNENEIYEKISFDVEAFRQSVGAPGKLMH
DSKTKLLQHRWRYPSLSLHGVEGAFYEPGQKTVIPRKVIGKFSIRAVPNQEPEKIEKLVV
DYVTRKFAELKSPNEIKCYMAHGGRPWTENPNHEHYQAAVRATKHVYKVEPDMTREGGSI
PVTLTFQEVSGKNVLLLPMGCGDDGAHSQNEKIDVRNYIEGSKLLGAYLYEVAQIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g15166.t10 Gene3D G3DSA:3.30.70.360 - 1 134 0
7 g15166.t10 Gene3D G3DSA:3.40.630.10 Zn peptidases 135 236 0
3 g15166.t10 PANTHER PTHR43270 BETA-ALA-HIS DIPEPTIDASE 1 235 0
4 g15166.t10 PANTHER PTHR43270:SF11 CYTOSOLIC NON-SPECIFIC DIPEPTIDASE 1 235 0
1 g15166.t10 Pfam PF07687 Peptidase dimerisation domain 56 128 0
2 g15166.t10 Pfam PF01546 Peptidase family M20/M25/M40 129 230 0
5 g15166.t10 SUPERFAMILY SSF53187 Zn-dependent exopeptidases 147 234 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed