General information for g1517.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g1517 is located on chr_3: 11535132..11539880 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1517 | g1517.t3 | isoform | g1517.t3 | 11535132 | 11539880 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon1 | 11535132 | 11535261 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS1 | 11535132 | 11535261 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon2 | 11535317 | 11535574 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS2 | 11535317 | 11535574 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon3 | 11535630 | 11535762 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS3 | 11535630 | 11535762 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon4 | 11535875 | 11536031 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS4 | 11535875 | 11536031 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon5 | 11536100 | 11536195 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS5 | 11536100 | 11536195 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon6 | 11536248 | 11536297 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS6 | 11536248 | 11536297 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon7 | 11539039 | 11539159 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS7 | 11539039 | 11539159 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon8 | 11539220 | 11539369 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS8 | 11539220 | 11539369 |
| chr_3 | g1517 | g1517.t3 | exon | g1517.t3.exon9 | 11539428 | 11539880 |
| chr_3 | g1517 | g1517.t3 | cds | g1517.t3.CDS9 | 11539428 | 11539880 |
| chr_3 | g1517 | g1517.t3 | TSS | g1517.t3 | NA | NA |
| chr_3 | g1517 | g1517.t3 | TTS | g1517.t3 | NA | NA |
Sequences
>g1517.t3 Gene=g1517 Length=1548
ATGGAAAATTCAAGCAAACCATCAATTCCTGATTTTTTCAAAGGCAAAAGTGTTTTTATA
ACAGGCGGTTTAGGATCTTTAGGAAAAGTGACTGTTGAAAAACTTCTTCGATCTTGTCCT
GGAATTGAAAATATTTTTCTGCTTGCAAGGCCAAAGAAAAACAATAATGTTCAAGACCGT
TTGAATGAGCTCAAAAATTCACCATTGTTTGCTAATTTGAAGGAGAATTCACCGGAATTA
TTAAAGAAAATTGTGATGATTGAAGGTGATACTGCTAAGGATAATTTGGGAATTTCTGAA
GCTGATCAAAAGATGATTTGTGAAAAAGTTTCAATTTTTATCAATTCTGCTGCATCAATA
AATTTCAATGATCCTTTAAAAGATGCTGTCAATACAAATGTGAGATCGATTATGGAATTA
CTTAAACTTGCAAGAAAAGTAAAAAATCTTGAGTCAATTGTTCATGTATCAACATCTTAT
ACAAATTGGTTTTGTTCGGATAATGATACAGTTTTAGTTGAAGAAAAATTTTATCCTGCT
GAATATAAACCAAATGATATTCTTAAGCTCACTGAAACAGTCTCAGAAAAACTTCTTGAG
AAGGTTACTCCACATATTTTGGGAAAGCATAAAAATACTTACACTTTTACAAAAAAATTA
GCTGAAGAATTCATTAAAAATGAAAAAGAAAATTTACCAATCACCATCGTTCGACCATCA
ATGATTATAGGAAGTGCAAAAGAACCAATGCCAGGCTGGATTGATAGTTGGGTTGGTCCA
ACAACATATGCATATTTCATTGCAAGAGGAATTTTCAGGTCATTCTATGTACATAAAAAT
AATGTTACTGAAGTCATTCCTGTTGATATGACTGCTAATTTAATTATTGCATCAGCATGG
AAAGTTGGTACTGAAAAAATTCAAAAAGAGCCAGAAATTTATCACAGTACAATTGGTATT
GCAAATTTCATAACATGGAAAAACTTGATGGACCTTTATTTGGCAAATGCAAAAAAATAT
CCACTTGATGATGTAATTTGGTACCCAACATACAGAATGATAAAAACTGAGTTCGGCTCA
AAATTTTACGGTTTTTTTACTGAAAGAATTCCTGCTTATTTAATTGATTTTGCTTCAATT
ATTATGGGAAAGAAACCAAGAATGATTCGTTTATATGATAAAATCGAATATGGTTATAGT
TTTACACGTTTTTGTACAATAAATCCAATTAGATTTGAATGCAAGAATTTTGAAAAATTA
ATCGACAAAATGAGTCCAAATGATGTTAAAGAATTTGATTTTGATGTGAGAAAAATCAAT
TGGAATAAATTTATTGAAGAACAACACCTTGGAGCTAGAAAATATTTATGGGGTTCAAAA
TCGACTGATTTTGCTGCAGGAAGGAGAAAAATTGCAAGATTGAGAATTGCAAATTATTTA
CTCGTTGGTTCAACAGTTGGAAGTTCTTTATTTTTATCTTATAAAGGATTTAATTTACTG
ACACATAAAGAACCAAAAATAGAAATTAATTTAGATCAGACAAATTGA
>g1517.t3 Gene=g1517 Length=515
MENSSKPSIPDFFKGKSVFITGGLGSLGKVTVEKLLRSCPGIENIFLLARPKKNNNVQDR
LNELKNSPLFANLKENSPELLKKIVMIEGDTAKDNLGISEADQKMICEKVSIFINSAASI
NFNDPLKDAVNTNVRSIMELLKLARKVKNLESIVHVSTSYTNWFCSDNDTVLVEEKFYPA
EYKPNDILKLTETVSEKLLEKVTPHILGKHKNTYTFTKKLAEEFIKNEKENLPITIVRPS
MIIGSAKEPMPGWIDSWVGPTTYAYFIARGIFRSFYVHKNNVTEVIPVDMTANLIIASAW
KVGTEKIQKEPEIYHSTIGIANFITWKNLMDLYLANAKKYPLDDVIWYPTYRMIKTEFGS
KFYGFFTERIPAYLIDFASIIMGKKPRMIRLYDKIEYGYSFTRFCTINPIRFECKNFEKL
IDKMSPNDVKEFDFDVRKINWNKFIEEQHLGARKYLWGSKSTDFAAGRRKIARLRIANYL
LVGSTVGSSLFLSYKGFNLLTHKEPKIEINLDQTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1517.t3 | CDD | cd05236 | FAR-N_SDR_e | 16 | 341 | 1.46166E-113 |
| 11 | g1517.t3 | CDD | cd09071 | FAR_C | 366 | 456 | 6.8873E-27 |
| 6 | g1517.t3 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 357 | 2.3E-70 |
| 3 | g1517.t3 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 7 | 482 | 1.8E-145 |
| 4 | g1517.t3 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 7 | 482 | 1.8E-145 |
| 1 | g1517.t3 | Pfam | PF07993 | Male sterility protein | 20 | 295 | 7.6E-70 |
| 2 | g1517.t3 | Pfam | PF03015 | Male sterility protein | 369 | 456 | 3.7E-24 |
| 7 | g1517.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 475 | - |
| 9 | g1517.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 476 | 494 | - |
| 8 | g1517.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 495 | 515 | - |
| 5 | g1517.t3 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 9 | 303 | 9.08E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed