General information for g1519.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g1519 is located on chr_3: 11544799..11545263 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1519 | g1519.t1 | TTS | g1519.t1 | 11543055 | 11543055 |
| chr_3 | g1519 | g1519.t1 | isoform | g1519.t1 | 11543127 | 11545263 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon1 | 11543127 | 11543256 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS1 | 11543127 | 11543256 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon2 | 11543312 | 11543569 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS2 | 11543312 | 11543569 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon3 | 11543629 | 11543761 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS3 | 11543629 | 11543761 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon4 | 11543873 | 11544029 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS4 | 11543873 | 11544029 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon5 | 11544098 | 11544193 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS5 | 11544098 | 11544193 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon6 | 11544246 | 11544295 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS6 | 11544246 | 11544295 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon7 | 11544799 | 11544919 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS7 | 11544799 | 11544919 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon8 | 11544983 | 11545133 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS8 | 11544983 | 11545133 |
| chr_3 | g1519 | g1519.t1 | exon | g1519.t1.exon9 | 11545208 | 11545263 |
| chr_3 | g1519 | g1519.t1 | cds | g1519.t1.CDS9 | 11545208 | 11545263 |
| chr_3 | g1519 | g1519.t1 | TSS | g1519.t1 | NA | NA |
Sequences
>g1519.t1 Gene=g1519 Length=1152
ATGCTGTCAATAACAAATGTGAGATCGATTATGGAATTACTTAAACTTGCAAGAAATCAA
TTGTTCATGTATCAACATCTTATACAAATTGGTTTTTGTTCGGATAATGATACAGTTTTA
GTTGAAGAAAAATTTTATCCTGCTGAATATAAACCAAATGATATTCTTAAGCTCACTGAA
ACAGTCTCAAGAAAACTTCTTGAGAAGGTCACTCCACATATTTTGGGAAAGCATAAAAAT
ACTTACACTTTTACAAAAAATTTAGCTGAAGAATTCATTAAAAATGAAAAAGAAAATTTA
CCAATCACCGTCGTTCGACCATCAATTATTATAGGAAGTGCAAAAGAACCAATGCCAGGA
TGGATTGATAATTGGATTGGTCCAACAACCTATGGATATTTCATTGGAAGAGGAATTTTG
AGGTCATTCAATGTACATAAAAATAATGTTGCTGAAGTCATTCCTGTTGATATGACTGCT
AATTTAATTATTGCATCAGCATGGAAAGTTGGAACTGAAAAAATTCAAAAAGAGCCAGAA
ATTTATCACAGTACAATTGGTATTGCAAATTTGATAACATGGAAAAACTTGATTGACCTT
TATTTGGCAAATGCAAAAAAATATCCACTTGATGATGTAATTTGGTACCCAACATACAGA
ATGATAAAAACTGAGTTCGGCTCAAAATTTTACGGTTTTTTTACTGAAAGAATTCCTGCT
TATTTAATTGATTTCGCTTCAATTATTATGGGAAAGAAACCAAGAATGATTCGTTTGTAT
GATAAAATCGAATATGGTTATAGTTTTGTACGATATTGTTCAACAAATCCAATTAGATTT
GAATGCAAGAATTTTGAAAAATTAATCGACAAAATGAGTCCAAATGATGTTAAAGAATTT
GATTTTGATGTGAGAAAAATCAATTGGAATAAATTTATTGAAGATCAATACCTTGGAGCT
AGAAAATATTTATGGGGTTCAAAATCGACTGATTTTGCTGCAGGAAGGAGAAAAATTGCA
AGATTGAGAATTGCAAATTATTTACTCGTTGGTTCAACAATTGGAAGTTCTTTGTTTTTA
TCTTATAAAGGATTTAATTTACTGACACATAAAGAACCAAAAATAGAAATTAACTTAGTT
CAGACAAATTGA
>g1519.t1 Gene=g1519 Length=383
MLSITNVRSIMELLKLARNQLFMYQHLIQIGFCSDNDTVLVEEKFYPAEYKPNDILKLTE
TVSRKLLEKVTPHILGKHKNTYTFTKNLAEEFIKNEKENLPITVVRPSIIIGSAKEPMPG
WIDNWIGPTTYGYFIGRGILRSFNVHKNNVAEVIPVDMTANLIIASAWKVGTEKIQKEPE
IYHSTIGIANLITWKNLIDLYLANAKKYPLDDVIWYPTYRMIKTEFGSKFYGFFTERIPA
YLIDFASIIMGKKPRMIRLYDKIEYGYSFVRYCSTNPIRFECKNFEKLIDKMSPNDVKEF
DFDVRKINWNKFIEDQYLGARKYLWGSKSTDFAAGRRKIARLRIANYLLVGSTIGSSLFL
SYKGFNLLTHKEPKIEINLVQTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1519.t1 | CDD | cd09071 | FAR_C | 234 | 324 | 1.12848E-27 |
| 6 | g1519.t1 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 225 | 2.3E-21 |
| 3 | g1519.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 5 | 350 | 7.5E-92 |
| 4 | g1519.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 5 | 350 | 7.5E-92 |
| 1 | g1519.t1 | Pfam | PF07993 | Male sterility protein | 5 | 163 | 1.2E-26 |
| 2 | g1519.t1 | Pfam | PF03015 | Male sterility protein | 237 | 324 | 1.5E-25 |
| 7 | g1519.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 343 | - |
| 9 | g1519.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 362 | - |
| 8 | g1519.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 363 | 383 | - |
| 5 | g1519.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 75 | 169 | 7.1E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed