Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15206 g15206.t2 isoform g15206.t2 4471168 4472511
chr_4 g15206 g15206.t2 exon g15206.t2.exon1 4471168 4471228
chr_4 g15206 g15206.t2 exon g15206.t2.exon2 4471587 4471880
chr_4 g15206 g15206.t2 cds g15206.t2.CDS1 4471739 4471880
chr_4 g15206 g15206.t2 exon g15206.t2.exon3 4471945 4472026
chr_4 g15206 g15206.t2 cds g15206.t2.CDS2 4471945 4472026
chr_4 g15206 g15206.t2 exon g15206.t2.exon4 4472082 4472223
chr_4 g15206 g15206.t2 cds g15206.t2.CDS3 4472082 4472223
chr_4 g15206 g15206.t2 exon g15206.t2.exon5 4472282 4472511
chr_4 g15206 g15206.t2 cds g15206.t2.CDS4 4472282 4472353
chr_4 g15206 g15206.t2 TSS g15206.t2 NA NA
chr_4 g15206 g15206.t2 TTS g15206.t2 NA NA

Sequences

>g15206.t2 Gene=g15206 Length=809
TCATAAACTTTTTTAAATGATGAAAAGTTGTTTGTTAAAATTATATTTTTTTATATGTAC
TTGTTTTAAATAAATCTTTAATTTGTCAACATGCATTGATCTGGACCAAAAATACACTAA
AAAATTCGTTTTATGGCGGAAACTATCATTATAATTTATTATTTTTGAATCTTAACACAG
CAAGCAGCTTTAATAGTCTCAATTTTAATTCAAATGCAAACTGCTGGTTTTAATTTGACA
ACTTTTCATTTTATTGGTCATAGTTTAGGAGCACAAATTTTTGGGCGTGTTGGTTATCAA
TTGATTCAAAATTACCACTTTACTCCAACTAGAATCACAGGACTTGATCCAGCTGGTCCT
TATTTTGGAAATTTGAATGAATGGCCAACTTTGCCGATTGCTTCAGCGTATCCTTCACTT
AATAAACTCAATGCTAAATTTGTCGACATAATTCATACTGATAGTTTTAAATATGGTGAA
GATTATTCGGCTGGTTATATAGATTTAAAATCTAAGATTTTTGGCCCAATACTGGAGCTT
TTCAACCAAACTGCAGCATTTATTGCAGTTCAACTGATTATAATTGCCTTCATTGCAGTC
ACAATAAAGCAGTGCAATATTACACTGAATCAATTCAATCAGGTTCTGTAAGAAAATTCA
TATCAAATTTATGTTCTGGTCTTGCATATAACACTGGATCTTGCTATGGCTCTGTTGCAT
CGATGGGCTTTTATGCTGATGAATATTCTGCTAATCCTGGCAATTATTCTCTTAAAACTT
ACAGTGTTTCACCATATTCTACTTCTTAA

>g15206.t2 Gene=g15206 Length=145
MQTAGFNLTTFHFIGHSLGAQIFGRVGYQLIQNYHFTPTRITGLDPAGPYFGNLNEWPTL
PIASAYPSLNKLNAKFVDIIHTDSFKYGEDYSAGYIDLKSKIFGPILELFNQTAAFIAVQ
LIIIAFIAVTIKQCNITLNQFNQVL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15206.t2 Gene3D G3DSA:3.40.50.1820 - 1 101 2.8E-23
2 g15206.t2 PANTHER PTHR11610 LIPASE 1 97 4.2E-18
1 g15206.t2 Pfam PF00151 Lipase 3 92 3.8E-13
6 g15206.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 108 -
8 g15206.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 109 131 -
7 g15206.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 132 145 -
4 g15206.t2 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 4 94 6.46E-12
3 g15206.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 109 131 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004806 triglyceride lipase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed