General information for g15207.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lipase member H-A.
Parent gene
- The parent gene g15207 is located on chr_4: 4473298..4474688 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15207 | g15207.t1 | isoform | g15207.t1 | 4473298 | 4474688 |
| chr_4 | g15207 | g15207.t1 | exon | g15207.t1.exon1 | 4473298 | 4473340 |
| chr_4 | g15207 | g15207.t1 | cds | g15207.t1.CDS1 | 4473298 | 4473340 |
| chr_4 | g15207 | g15207.t1 | exon | g15207.t1.exon2 | 4473430 | 4473452 |
| chr_4 | g15207 | g15207.t1 | cds | g15207.t1.CDS2 | 4473430 | 4473452 |
| chr_4 | g15207 | g15207.t1 | exon | g15207.t1.exon3 | 4473544 | 4473828 |
| chr_4 | g15207 | g15207.t1 | cds | g15207.t1.CDS3 | 4473544 | 4473828 |
| chr_4 | g15207 | g15207.t1 | exon | g15207.t1.exon4 | 4473890 | 4474064 |
| chr_4 | g15207 | g15207.t1 | cds | g15207.t1.CDS4 | 4473890 | 4474064 |
| chr_4 | g15207 | g15207.t1 | exon | g15207.t1.exon5 | 4474121 | 4474202 |
| chr_4 | g15207 | g15207.t1 | cds | g15207.t1.CDS5 | 4474121 | 4474202 |
| chr_4 | g15207 | g15207.t1 | exon | g15207.t1.exon6 | 4474266 | 4474393 |
| chr_4 | g15207 | g15207.t1 | cds | g15207.t1.CDS6 | 4474266 | 4474393 |
| chr_4 | g15207 | g15207.t1 | exon | g15207.t1.exon7 | 4474453 | 4474688 |
| chr_4 | g15207 | g15207.t1 | cds | g15207.t1.CDS7 | 4474453 | 4474688 |
| chr_4 | g15207 | g15207.t1 | TSS | g15207.t1 | NA | NA |
| chr_4 | g15207 | g15207.t1 | TTS | g15207.t1 | NA | NA |
Sequences
>g15207.t1 Gene=g15207 Length=972
ATGAAAAGTTTTATGTCTAAAGTTTTATTATTTTATATATGCTTATATGAAGGACAAACT
ATGATTATTGATGGTGGCATTTATTTTATTTTCTATGGTTCAAATTCTTCTGATTATGTA
AACACAACACTCAATTATGATTTTGTAAGTTTACAAAACACAAATTATTTTAATATGAGC
AAACCAACTGCTATTTTCAATCACGGATGGATATATGATGTTCACACTGACATTTATGTT
GCTCTAGCAGAAGCCTATTTAAGTAGAGGCGATTACAATTATATTGCAATTGATTGGAGC
AAATATTCACATGATATCAATTATCCTGAACTTGTTACATCGATAAATGATCAAGCAGCT
TTAATAGTCTCAATTTTAATTCAAATGCAAACTGCTGGTTTTAATTTGACAACTTTTCAT
TTTATTGGTCATAGCTTCGGTGCTCAAATTTTTGGACGTGTTGGCTATCAATTGATTCAA
AATTACAATTTTACTCCAACAAGAATCACAGGACTTGATCCAGCTGGTCCAATGTTTGGA
AATTTCAATGAATGGCCAACTTCACCGATTGCTTTATTATATCCTTCACTTAATATACTC
AATGCTAAATTTGTTGATATAATTCACACTGATCGTTACAAGAATAGTGAAGATTATTCG
GCTGGTCATATGGACTTTTGGCCCAATACTGGAGCTTATCAACCAGGTTGCAGCATTTTT
TGCGATACACAGGATTATAATTGTCTTGTATGCAGTCACAATAGAGCAGTAAAATATTAC
ACTGAATCAATTCAATCAGGTTCTGTAAGAAAATTCAAATCAAATTTATGTTCTGGTCTT
GGATATGATATCGGACTGTGTTTTGGTTCAGTTGCATCGATGGGCTTTTATGCTGATAAA
TATTCTGCTAATCCTGGCAATTATTCTCTTACTACTAATAGTGTCTCGCCTTACTCTGTT
TCTAATGCTTGA
>g15207.t1 Gene=g15207 Length=323
MKSFMSKVLLFYICLYEGQTMIIDGGIYFIFYGSNSSDYVNTTLNYDFVSLQNTNYFNMS
KPTAIFNHGWIYDVHTDIYVALAEAYLSRGDYNYIAIDWSKYSHDINYPELVTSINDQAA
LIVSILIQMQTAGFNLTTFHFIGHSFGAQIFGRVGYQLIQNYNFTPTRITGLDPAGPMFG
NFNEWPTSPIALLYPSLNILNAKFVDIIHTDRYKNSEDYSAGHMDFWPNTGAYQPGCSIF
CDTQDYNCLVCSHNRAVKYYTESIQSGSVRKFKSNLCSGLGYDIGLCFGSVASMGFYADK
YSANPGNYSLTTNSVSPYSVSNA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15207.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 20 | 319 | 4.8E-64 |
| 2 | g15207.t1 | PANTHER | PTHR11610 | LIPASE | 40 | 319 | 5.8E-59 |
| 5 | g15207.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 51 | 70 | 5.0E-9 |
| 4 | g15207.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 138 | 156 | 5.0E-9 |
| 3 | g15207.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 251 | 266 | 5.0E-9 |
| 1 | g15207.t1 | Pfam | PF00151 | Lipase | 46 | 318 | 2.5E-38 |
| 10 | g15207.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 11 | g15207.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 12 | g15207.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 15 | - |
| 13 | g15207.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 9 | g15207.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 323 | - |
| 6 | g15207.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 41 | 318 | 1.61E-44 |
| 7 | g15207.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed