General information for g15208.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15208 is located on chr_4: 4477283..4478619 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15208 | g15208.t2 | TSS | g15208.t2 | 4477249 | 4477249 |
| chr_4 | g15208 | g15208.t2 | isoform | g15208.t2 | 4477283 | 4478261 |
| chr_4 | g15208 | g15208.t2 | exon | g15208.t2.exon1 | 4477283 | 4477332 |
| chr_4 | g15208 | g15208.t2 | exon | g15208.t2.exon2 | 4477505 | 4477789 |
| chr_4 | g15208 | g15208.t2 | cds | g15208.t2.CDS1 | 4477613 | 4477789 |
| chr_4 | g15208 | g15208.t2 | exon | g15208.t2.exon3 | 4477851 | 4478025 |
| chr_4 | g15208 | g15208.t2 | cds | g15208.t2.CDS2 | 4477851 | 4478025 |
| chr_4 | g15208 | g15208.t2 | exon | g15208.t2.exon4 | 4478082 | 4478163 |
| chr_4 | g15208 | g15208.t2 | cds | g15208.t2.CDS3 | 4478082 | 4478163 |
| chr_4 | g15208 | g15208.t2 | exon | g15208.t2.exon5 | 4478226 | 4478261 |
| chr_4 | g15208 | g15208.t2 | cds | g15208.t2.CDS4 | 4478226 | 4478259 |
| chr_4 | g15208 | g15208.t2 | TTS | g15208.t2 | NA | NA |
Sequences
>g15208.t2 Gene=g15208 Length=628
ATGAAAAACTTTTTATCTAAAATTTTATATCTTTTCATATTTTGTAAGTTATTGATGGTG
GCATTTATTTTATTTTCTTTGGTTCAAATTCTTCTGATTATGTTAACACAACATTCAATT
ATGATTTTGCAAGTTTAAAAAACACAAATTATTTTAATATGAGCAAACCAACTGCTATTG
TTAACCATGGCTGGATACACAATATACATACTTCATTTTATGTTGCTCTAGCAGAAGCCT
ATTTGAGTAGAGGCGATTTTAATTATATTGCAATTGATTGGAGCAAATACTCACGTGATA
TCAATTATGCTGATCTTCCCCCAACATTTAATGATCAAGCAGCTTTAATAGTCTCAATTT
TAATTCAAATGCAAACTGCTGGTTTTAATTTGACAACTTTTCATTTTATTGGTCATAGCT
TTGGTGCTCAAATTTTTGGACGTGTTGGCTATCAATTGATTCAAAATTACCACTTTACTC
CAACTAGAATCACAGGATTTGATCCAGCTGGTCCAATGTTTGGAAATTTCAATGAATGGC
CAACTTCACCGGTTGCTTTATTGTATCCTTCACTTAATAAACTCAATGCTAAATTTGTTG
ATATAATTCACACTGATCGTTATAAAAT
>g15208.t2 Gene=g15208 Length=156
MSKPTAIVNHGWIHNIHTSFYVALAEAYLSRGDFNYIAIDWSKYSRDINYADLPPTFNDQ
AALIVSILIQMQTAGFNLTTFHFIGHSFGAQIFGRVGYQLIQNYHFTPTRITGFDPAGPM
FGNFNEWPTSPVALLYPSLNKLNAKFVDIIHTDRYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15208.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 156 | 0 |
| 2 | g15208.t2 | PANTHER | PTHR11610 | LIPASE | 2 | 153 | 0 |
| 3 | g15208.t2 | PANTHER | PTHR11610:SF164 | GH15759P-RELATED | 2 | 153 | 0 |
| 1 | g15208.t2 | Pfam | PF00151 | Lipase | 2 | 154 | 0 |
| 4 | g15208.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 3 | 155 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed