General information for g15213.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15213 is located on chr_4: 4498895..4499644 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15213 | g15213.t1 | isoform | g15213.t1 | 4498895 | 4499644 |
| chr_4 | g15213 | g15213.t1 | exon | g15213.t1.exon1 | 4498895 | 4498916 |
| chr_4 | g15213 | g15213.t1 | cds | g15213.t1.CDS1 | 4498895 | 4498916 |
| chr_4 | g15213 | g15213.t1 | exon | g15213.t1.exon2 | 4499012 | 4499063 |
| chr_4 | g15213 | g15213.t1 | cds | g15213.t1.CDS2 | 4499012 | 4499063 |
| chr_4 | g15213 | g15213.t1 | exon | g15213.t1.exon3 | 4499130 | 4499271 |
| chr_4 | g15213 | g15213.t1 | cds | g15213.t1.CDS3 | 4499130 | 4499271 |
| chr_4 | g15213 | g15213.t1 | exon | g15213.t1.exon4 | 4499423 | 4499644 |
| chr_4 | g15213 | g15213.t1 | cds | g15213.t1.CDS4 | 4499423 | 4499644 |
| chr_4 | g15213 | g15213.t1 | TSS | g15213.t1 | NA | NA |
| chr_4 | g15213 | g15213.t1 | TTS | g15213.t1 | NA | NA |
Sequences
>g15213.t1 Gene=g15213 Length=438
ATGACTGGAATGGATCCCGCAATATCAGGTGGAATTGTACCTATATATCCTGCATTGACT
CAAATTCATGCAAAATTTGTTGATATAATTCACACTGATGCTGGATGGATTGGAGAAAGT
TCATCAGTTGGTCATATTGACTTTTGGGTCAATGATAATGGTACACCACAATACAAATGC
AGTTTACTTAATATTTTTGATCTTTGCAATTCTACGTCACAACAGAGCACCAAAATATTA
CGCAGAATCAGTAACAAGATCATCAACAAGTCAACCATTATTGGAAAAAAATGTTCAGGT
TCGACTTTCACAAAAGCAGCATGCACTGGAACAGTAACAGCTTCGATGGGATTTTATGCA
GATCAATATGCAAGCAATCCTGGTAATTATTATGTTGCAACTAAAACTAATGGAATTCCA
CCTTATTCTGTACAATAA
>g15213.t1 Gene=g15213 Length=145
MTGMDPAISGGIVPIYPALTQIHAKFVDIIHTDAGWIGESSSVGHIDFWVNDNGTPQYKC
SLLNIFDLCNSTSQQSTKILRRISNKIINKSTIIGKKCSGSTFTKAACTGTVTASMGFYA
DQYASNPGNYYVATKTNGIPPYSVQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15213.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 145 | 0e+00 |
| 2 | g15213.t1 | PANTHER | PTHR11610 | LIPASE | 2 | 137 | 0e+00 |
| 3 | g15213.t1 | PANTHER | PTHR11610:SF164 | GH15759P-RELATED | 2 | 137 | 0e+00 |
| 1 | g15213.t1 | Pfam | PF00151 | Lipase | 2 | 135 | 1e-07 |
| 4 | g15213.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 4 | 64 | 3e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
