General information for g15239.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable chitinase 10.
Parent gene
- The parent gene g15239 is located on chr_4: 4614239..4615409 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15239 | g15239.t1 | isoform | g15239.t1 | 4607300 | 4614239 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon1 | 4607300 | 4607442 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS1 | 4607300 | 4607442 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon2 | 4607497 | 4607609 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS2 | 4607497 | 4607609 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon3 | 4607706 | 4610185 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS3 | 4607706 | 4610185 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon4 | 4610241 | 4610586 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS4 | 4610241 | 4610586 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon5 | 4610663 | 4611028 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS5 | 4610663 | 4611028 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon6 | 4611093 | 4611928 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS6 | 4611093 | 4611928 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon7 | 4611985 | 4612154 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS7 | 4611985 | 4612154 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon8 | 4612234 | 4612602 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS8 | 4612234 | 4612602 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon9 | 4612659 | 4612955 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS9 | 4612659 | 4612955 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon10 | 4613015 | 4613935 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS10 | 4613015 | 4613935 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon11 | 4613995 | 4614060 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS11 | 4613995 | 4614060 |
| chr_4 | g15239 | g15239.t1 | exon | g15239.t1.exon12 | 4614122 | 4614239 |
| chr_4 | g15239 | g15239.t1 | cds | g15239.t1.CDS12 | 4614122 | 4614239 |
| chr_4 | g15239 | g15239.t1 | TSS | g15239.t1 | NA | NA |
| chr_4 | g15239 | g15239.t1 | TTS | g15239.t1 | NA | NA |
Sequences
>g15239.t1 Gene=g15239 Length=6225
ATGCTGAGTATTTCAGTATCTGGTTATAAAGAAATTATCACTGAAGGTTATGACTTTGTT
TCACTCTCAAAAAATGTTGATTTTATGACTGTTATGACTTATGATTATCATGGAGCTTGG
GAAAGTGTTACTGGTCATGTTAGTCCACTTTATGGAAGTTCGAATGATAAATATCCACAA
TATAACACTGATTATACAATAAAATTATTGATTGAATCTGGTGCTGATAAAGAAAAAATT
ATCATGGGAGTTCCATTCTATGCACAATCATTCACACTTCGCTCACCAAATAGTCGTGGT
TATAATTCGCAATCATACGGCCCAGGATCGCCAGGCGAATTTACATCACAACCAGGAATG
CTTGCATATCATGAAATTTGTGCAATGTTGAAGAAACCAGGTTACAAAAAAGGCAACGAT
CCGAGTGGAAATTCAGGACCGTACATTACAGATGGAAAAATTTGGGCTGGCTTTGATGAT
CCTGAATGGGTACAAAAGAAAGCAAAATATGTCGTTGATAATGAACTTGGTGGTGTTTCA
GCTTGGACAGTTGACCTTGATGATTTCAATAATAAATGTTGTGTTGAAGCTTTTCCATTG
TTGAAGGCAATCAATCGTGGTTTAGGAAGAATTAATTCAAATGCACCAACTGGTTATGAT
TGTAAAAAACCATCAGTGGTCACTCCACCACCAGTAATTATGCAAACAACTGCAGATTCT
GGTTTTGCTGGCATTCCAATGGATGATTCTGCAACAAAATCAACAACATCATCATGGTGG
ACACCAAGTACAACAACAATGTCAACAACTAGAAAAACGACAACAAGAAAGCCAGCAGTT
CAATCTACGACTAAAAAGCCATTTTATAAACCATCAGGAACTAAACCATCATCAACTTCG
TCAACATCGATTCCAGTTCCAGTCAATGTCGTTCCTGATGTTGTTGATAATGAACCATGC
ATAGAAGGTCAATATACTGCACATCCTGCAGAATGCAATCAATATATTATTTGCATCCGT
GGGGAAAAAATCGCACGTCATTGTCCTGGTGGATTACATTGGAATGATATGCATAAACAT
TGTGATTGGCCAGAAAGTGCAAATTGCGTTGCAGGTGAAAATGCAGTTCAGGAAGATGAA
ATTATTCCAAGTTCTACAACAACATCTACCACAACAACAATGAGAACAAGGAAAACTACG
AAAAATACAAGAACAACAACAACCACAAGAATAACAACTGCAAAACGTACAAGACCGCCA
ACAACTACAATCACAACTACTATGATGACAACGACAGTACCAACAACTACTAGAAGAATT
ACAACCAAACGAACAAAAAGACCAACGACAACAGTTAGACCAACATATTATGAAACTACA
ACCACAACAATGCCACCAGAAACAAGCAGTAAAAAGCCAGTTAGAAAACCAACGAAATGC
GTTAATGGTGAATATTTACCACATAAAGATTGTGCAAAATATTACATTTGTACAAATAAT
AGAAAAGTTCCAATGTCATGTCCTGATGGATTGCAATATAACCATGAAATCAAAAATTGT
GATTATGAAGAAAAAGTCAAATGTGTATCAAGGAAAAAATATCAAAAACTTCTTGAAAAA
CTTTATAGAAAAACTGGAATTTATACTGCAGCACTTTTACGAGCAACAGCTGGTGAGACA
TGCAACAATGGTGAAAGATTTGCACCATTCCCAGGTGATTGTAGGTATTACCTAGAATGT
GTTCATGAAAAAATGTTTAAACGTGATTGTCCAAGTGGTTTAATTTGGAATCCAAATGCA
AATAATTGCGATTGGGAACAAAATTATAAATGTGATCATCCAGAAGGTGAAGAAGAAGAA
GAGGAAGATTATGACGAAGATGATGAAGAAGATGAAGCTGAAGTTATTACACAAAATGAA
GTTTTTCATGAATTTTCACCGGCATCATCACCTAAACCTGCTGCACCATCAAAACCTTCA
AAGCCAGTCACATCAGCATCAAAACCATCAGTTGGCACAGGATTAATGACAATTCCAGTT
AATGATGAAATTGAACCATTGAAAGGAAATTTAAAACTTGTCTGCTATTTCACCAATTGG
GCGTGGTATAGACCAGGTGATGGAAAATATCTACCAAGTGATATTGATGCAAATCTTTGT
ACACACATTGTCTATGGTTTTGCTGTGTTAAATTATGATCAATTGACAATTACAACACAT
GATTCATGGGCTGATATTGACAATCGATTCTATGAGCGTGTTGTTGAGTACAAAAATAAA
GGAATTAAAGTGTCACTTGCTATTGGTGGATGGAATGATTCTGCTGGTGACAAATACAGT
CGACTTGTTAGAAATCCAGCTGCAAGAAGAAAGTTCATCAATCATGTTGTTGGATTCTTA
GAGAAATATGGCTTTGATGGTTTGGATCTTGATTGGGAATATCCAGTATGTTGGCAAGTT
GATTGCAAGAAAGGTTTTGCTGATGAAAAGCAACATTTTGCTGCTTTTGTTAAAGAACTT
TCAGAAGCATTTAAACCAAAAGGATTGTTATTGTCAGCTGCTGTTTCACCTAGTAAAACT
GTCATCGACGCTGGCTATGAAGTCAAAGATTTATCACGCTATTTGAATTGGATTGCTATC
ATGTGCTACGATTATCATGGACAATGGGATAAGAAAACTGGACATGTTGCACCACTTTAT
TATCATCCTGATGACGAAGTTAACTTTTTCAATACCAACTATTCAATAAATTATTGGCTT
CAACTTGGAACACCAAAAGAAAAACTCATCATGGGAATGCCACTTTATGGTCAATCATTT
ACACTTGCTGATGCAAAGAAGAATGGATTGAATGCTGGAGCACCAGGACCAGGACAAGCT
GGCGAATTTACAAGAGCTGCTGGATTCCTTTCATACTATGAAATTTGTGATCGAATTTTC
AATCGTGGATGGACAGTTGTTCAAGACCCTGAAGGCAGAATGGGACCATATGCTTATAGT
GGCAATCAATGGGTTTCATTTGATGATCAAGCAATGTTGAAGAAAAAAGTTCAGTTTATT
AAAGAAATGGGAATTGGAGGAGGAATGATTTGGGCACTTGATTTGGACGATTTCCGTGGA
AAATGTGGTCAAGGAAAACATCCATTATTGAAAGTCATTCATGCCGAATTGCAAAATGCT
AGCGTTGACGTAGAAGAGGATGAAGAATATGAAGATGAAGAGAATGAACCACAACAACCA
CCATCACATTCTGAAACGCCTGTTGTCATTATTCCAGTAGATAGACCTGAAGAAAATGAA
GTTGTTGTTGGACAAGAAGAAACTGAAGCAGTTCCAGATGAAGAAAATGAAGGTGCAGGA
CAAGAAACGGAAGAAGAAGAGGAAGATTATGATGATGAAGATACAAATGAAGTTGATGAG
TTCGATGGCCAATATAAAGTTGTCTGCTACTTTACAAATTGGGCATGGTATCGTCCTGGA
ATTGGCAAATTTAAACCAGAAGATGTTGATCCCGATTTGTGTACACACATTGTCTATGGT
TTTGCTGTTCTTGATAGAGACACATTAACAATTAAACCTCATGATTCTTGGGCTGATATT
GATAATAAATTTTATGAAAAAGTCACAGAATATAAAAAACGAGGAGTTAAAGTTACAATT
GCTATTGGTGGTTGGAATGACTCTGCTGGTGATAAATACAGTCGACTTGTACTGAGCACA
GAAGCAAGACGAAGATTTGTAAGACATGTGACAGAATTTATTGAAAAATACAACTTTGAT
GGCTTAGATCTCGATTGGGAATATCCAGTATGTTGGCAAGTTGAATGCAATAAAGGAAAA
CCAGAAGAAAAGCAAGCTTTCTCAATGTTGGTCAAAGAACTCTCAGAAGCATTTAAGCCT
AAAGGACTTTTGCTTTCAACAGCTGTTTCACCTAGCAAAATGGTCATCGACGCTGGCTAT
GAAGTCAAAGTTTTATCAGACTATTTTGATTGGATTTCTGTCATGTGCTACGATTATCAT
GGTCAATGGGACAAAAAGACTGGACATGTTGCACCAATGTATATTCATCCAGAATCATCA
ATACCAACTTTCAATGCCAATTACACAATGAATTATTGGATCGAAAAAGGAGCTGATCCA
AGAAAATTAATTATGGGTATGCCAATGTATGGTCAATCATTCTCACTTGCTGATAGAAAT
AATGTTGGACTCAATAGTCCATCTTATGGTGGTGGTGAAGCTGGTGAAGATACAAGGGCT
CGTGGTTTCTTATCATACTATGAAATTTGCATGAGAATTAAAAGAAAGAATTGGAAAGTA
GTAAAAGATTCACGTGGAAGAATTGGTCCATATGCATATAGTGGTGATCAATGGGTTTCA
TTTGATGATGTTCATATGATTCGTCATAAGAGTGAATATGTTAAAGCTTTAGGACTTGGT
GGTGCTATGATTTGGGCACTTGATCTTGATGATTTCAAAAACTCATGTGAATGTGAAGAA
TATCCGCTTCTTCGTACAATCAATCGTGTTTTAAGAAATTATCCAGGATCACATAAAGAC
TGTACACTTGAAAATCGTAAGCATTACAAACCAACAGCTGAAAAGACAACAAAGAAACCA
ATAATTCCTGTAACAACGACAACAAAACCAAGAAAAACAACAGAAGCACCAGTGCAAGAA
GAAGAATATGATGAATATGATGAAGAAAATGAAGTTTCTGTTCCAGTTGATACAAGAAGT
TGTAATGGAAGAAGTTTTAGACCACATGAAAAATATTGTGATAAATATTACATGTGTGAT
AATGGAAATTCAATTTTATCATCATGTAGTCATGGTCTTCATTGGAATGCAGTTATGAAT
ATTTGTGATTGGCCAATAAATGTTAAATGTACACTTAAGCCACATGAAGGATCAAATGAT
GAAGAAGTTGAAGCTGAAAATGAAGTTTCATCTGGTGGAAATAAGCCATCATATTCGCCA
TCATCAACAACACGTAAACCATCAACAACTGCAACAACAAAAAAACCAAGACCAACAAAA
CCACCAATTGTCAGTGATCCATTTGTGCCAACAGGAAATAATGAATTTATGGTTGTGTGC
TATTTCACAAACTGGGCATGGTATCGTCCAGGAATTGGTAAATATAAGCCAGATGATATT
GATACAACTCTATGCACACATATTGTTTATGGCTTTGCAACACTCAATAGTGAAACATTG
ACAATTAGAATTCATGATTCATGGGCTGATATTGACAACAACTTTTATACAAGAGTCTCA
GGGTTGAAGGAGAAAGGTGTTAAAGTTAGCATCGCTCTTGGTGGATGGAATGATTCATTA
GGTGACAAATATAGTCGTTTAGTGAGAAATCCAGAAGCAAGAAAAAGATTCATTGTTAAT
GTCATTGAATTTATGGAAAAGTATGGCTTTCAAGGTCTTGATCTTGATTGGGAATATCCA
GTATGTTGGCAAGTTGATTGTACAAAAGGAAAACCAGATGAAAAACAAGCATTTACTGCT
TTCGTTAAAGAACTTTCAGAAGCATTTAAACCAAAAGGATTGTTATTGTCAGCTGCTGTT
TCACCTAGTAAAAAAGTCATCGATGCTGGCTATGAAGTCAAAGATTTATCACGCTATTTT
GATTGGATTGCTATAATGTGTTATGATTATCATGGACAATGGGATAAGAAAACTGGACAT
GTTGCACCACTTTATGAACATCCTGATGATTGGGAAAAAACTTTCAATGCCAATTTCACA
ATTAATTATTGGATTGAAAAAGGTGCACCACCAAATAAACTTGTTATGGGAATGCCAACT
TATGGACAATCATTTTCATTGGAGAAAGTTGATAATAATGGTTTGAATGAAAAAGCACCA
GGACCAGGACAAGCTGGTGAATTTACAAGATCTGCTGGATTTTTGGCTTTCTATGAAATT
TGTCATAAAATCAATAGCGGTGGATGGACCGTTGTGAAAGATCCTGAAGGCAGAATGGGA
CCATATGCATACAATCATCGTCAATGGGTTTCTTATGATGATGTTGAACAAATTCGATTG
AAATCTAAATTTGTTAAAGATATGAAGCTTGCTGGTGCTATGATTTGGGCACTTGATCTT
GACGATTTCCGTAATCGATGTGGTTGTGGAACTCATCCGTTATTGTCAACAATAAATGCA
GAATTGGGTAGAATAAATACACCACGATTATCTGACTGTACTTAA
>g15239.t1 Gene=g15239 Length=2074
MLSISVSGYKEIITEGYDFVSLSKNVDFMTVMTYDYHGAWESVTGHVSPLYGSSNDKYPQ
YNTDYTIKLLIESGADKEKIIMGVPFYAQSFTLRSPNSRGYNSQSYGPGSPGEFTSQPGM
LAYHEICAMLKKPGYKKGNDPSGNSGPYITDGKIWAGFDDPEWVQKKAKYVVDNELGGVS
AWTVDLDDFNNKCCVEAFPLLKAINRGLGRINSNAPTGYDCKKPSVVTPPPVIMQTTADS
GFAGIPMDDSATKSTTSSWWTPSTTTMSTTRKTTTRKPAVQSTTKKPFYKPSGTKPSSTS
STSIPVPVNVVPDVVDNEPCIEGQYTAHPAECNQYIICIRGEKIARHCPGGLHWNDMHKH
CDWPESANCVAGENAVQEDEIIPSSTTTSTTTTMRTRKTTKNTRTTTTTRITTAKRTRPP
TTTITTTMMTTTVPTTTRRITTKRTKRPTTTVRPTYYETTTTTMPPETSSKKPVRKPTKC
VNGEYLPHKDCAKYYICTNNRKVPMSCPDGLQYNHEIKNCDYEEKVKCVSRKKYQKLLEK
LYRKTGIYTAALLRATAGETCNNGERFAPFPGDCRYYLECVHEKMFKRDCPSGLIWNPNA
NNCDWEQNYKCDHPEGEEEEEEDYDEDDEEDEAEVITQNEVFHEFSPASSPKPAAPSKPS
KPVTSASKPSVGTGLMTIPVNDEIEPLKGNLKLVCYFTNWAWYRPGDGKYLPSDIDANLC
THIVYGFAVLNYDQLTITTHDSWADIDNRFYERVVEYKNKGIKVSLAIGGWNDSAGDKYS
RLVRNPAARRKFINHVVGFLEKYGFDGLDLDWEYPVCWQVDCKKGFADEKQHFAAFVKEL
SEAFKPKGLLLSAAVSPSKTVIDAGYEVKDLSRYLNWIAIMCYDYHGQWDKKTGHVAPLY
YHPDDEVNFFNTNYSINYWLQLGTPKEKLIMGMPLYGQSFTLADAKKNGLNAGAPGPGQA
GEFTRAAGFLSYYEICDRIFNRGWTVVQDPEGRMGPYAYSGNQWVSFDDQAMLKKKVQFI
KEMGIGGGMIWALDLDDFRGKCGQGKHPLLKVIHAELQNASVDVEEDEEYEDEENEPQQP
PSHSETPVVIIPVDRPEENEVVVGQEETEAVPDEENEGAGQETEEEEEDYDDEDTNEVDE
FDGQYKVVCYFTNWAWYRPGIGKFKPEDVDPDLCTHIVYGFAVLDRDTLTIKPHDSWADI
DNKFYEKVTEYKKRGVKVTIAIGGWNDSAGDKYSRLVLSTEARRRFVRHVTEFIEKYNFD
GLDLDWEYPVCWQVECNKGKPEEKQAFSMLVKELSEAFKPKGLLLSTAVSPSKMVIDAGY
EVKVLSDYFDWISVMCYDYHGQWDKKTGHVAPMYIHPESSIPTFNANYTMNYWIEKGADP
RKLIMGMPMYGQSFSLADRNNVGLNSPSYGGGEAGEDTRARGFLSYYEICMRIKRKNWKV
VKDSRGRIGPYAYSGDQWVSFDDVHMIRHKSEYVKALGLGGAMIWALDLDDFKNSCECEE
YPLLRTINRVLRNYPGSHKDCTLENRKHYKPTAEKTTKKPIIPVTTTTKPRKTTEAPVQE
EEYDEYDEENEVSVPVDTRSCNGRSFRPHEKYCDKYYMCDNGNSILSSCSHGLHWNAVMN
ICDWPINVKCTLKPHEGSNDEEVEAENEVSSGGNKPSYSPSSTTRKPSTTATTKKPRPTK
PPIVSDPFVPTGNNEFMVVCYFTNWAWYRPGIGKYKPDDIDTTLCTHIVYGFATLNSETL
TIRIHDSWADIDNNFYTRVSGLKEKGVKVSIALGGWNDSLGDKYSRLVRNPEARKRFIVN
VIEFMEKYGFQGLDLDWEYPVCWQVDCTKGKPDEKQAFTAFVKELSEAFKPKGLLLSAAV
SPSKKVIDAGYEVKDLSRYFDWIAIMCYDYHGQWDKKTGHVAPLYEHPDDWEKTFNANFT
INYWIEKGAPPNKLVMGMPTYGQSFSLEKVDNNGLNEKAPGPGQAGEFTRSAGFLAFYEI
CHKINSGGWTVVKDPEGRMGPYAYNHRQWVSYDDVEQIRLKSKFVKDMKLAGAMIWALDL
DDFRNRCGCGTHPLLSTINAELGRINTPRLSDCT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 46 | g15239.t1 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 693 | 1057 | 0.0 |
| 44 | g15239.t1 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 1147 | 1511 | 5.21439E-172 |
| 45 | g15239.t1 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 1698 | 2062 | 7.51778E-178 |
| 41 | g15239.t1 | Gene3D | G3DSA:3.10.50.10 | - | 91 | 158 | 1.7E-16 |
| 35 | g15239.t1 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 313 | 377 | 1.7E-16 |
| 36 | g15239.t1 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 470 | 540 | 2.7E-13 |
| 34 | g15239.t1 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 553 | 619 | 9.6E-11 |
| 37 | g15239.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 693 | 1056 | 9.4E-145 |
| 43 | g15239.t1 | Gene3D | G3DSA:3.10.50.10 | - | 935 | 1007 | 9.4E-145 |
| 38 | g15239.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1147 | 1510 | 9.5E-143 |
| 40 | g15239.t1 | Gene3D | G3DSA:3.10.50.10 | - | 1389 | 1461 | 9.5E-143 |
| 33 | g15239.t1 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 1574 | 1637 | 3.8E-16 |
| 39 | g15239.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1698 | 2061 | 3.2E-144 |
| 42 | g15239.t1 | Gene3D | G3DSA:3.10.50.10 | - | 1940 | 2012 | 3.2E-144 |
| 60 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 304 | - |
| 63 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 408 | - |
| 62 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 633 | - |
| 58 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 633 | - |
| 57 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 669 | - |
| 59 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1063 | 1136 | - |
| 66 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1136 | - |
| 61 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1547 | 1571 | - |
| 65 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1639 | 1686 | - |
| 64 | g15239.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1650 | 1676 | - |
| 14 | g15239.t1 | PANTHER | PTHR11177 | CHITINASE | 1 | 396 | 0.0 |
| 20 | g15239.t1 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 1 | 396 | 0.0 |
| 10 | g15239.t1 | PANTHER | PTHR11177 | CHITINASE | 448 | 528 | 0.0 |
| 16 | g15239.t1 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 448 | 528 | 0.0 |
| 12 | g15239.t1 | PANTHER | PTHR11177 | CHITINASE | 559 | 617 | 0.0 |
| 18 | g15239.t1 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 559 | 617 | 0.0 |
| 9 | g15239.t1 | PANTHER | PTHR11177 | CHITINASE | 675 | 1053 | 0.0 |
| 15 | g15239.t1 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 675 | 1053 | 0.0 |
| 13 | g15239.t1 | PANTHER | PTHR11177 | CHITINASE | 1126 | 1669 | 0.0 |
| 19 | g15239.t1 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 1126 | 1669 | 0.0 |
| 11 | g15239.t1 | PANTHER | PTHR11177 | CHITINASE | 1681 | 2059 | 0.0 |
| 17 | g15239.t1 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 1681 | 2059 | 0.0 |
| 8 | g15239.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 1 | 187 | 2.0E-39 |
| 3 | g15239.t1 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 323 | 369 | 3.2E-11 |
| 2 | g15239.t1 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 482 | 528 | 4.8E-11 |
| 4 | g15239.t1 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 561 | 611 | 1.3E-9 |
| 6 | g15239.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 692 | 1036 | 5.4E-89 |
| 5 | g15239.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 1146 | 1490 | 3.3E-86 |
| 1 | g15239.t1 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 1581 | 1630 | 4.2E-11 |
| 7 | g15239.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 1698 | 2041 | 7.4E-89 |
| 47 | g15239.t1 | ProSitePatterns | PS01095 | Chitinases family 18 active site. | 805 | 813 | - |
| 48 | g15239.t1 | ProSitePatterns | PS01095 | Chitinases family 18 active site. | 1259 | 1267 | - |
| 70 | g15239.t1 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 317 | 371 | 12.746 |
| 68 | g15239.t1 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 477 | 530 | 12.543 |
| 69 | g15239.t1 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 558 | 613 | 13.025 |
| 67 | g15239.t1 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 1578 | 1632 | 12.962 |
| 51 | g15239.t1 | SMART | SM00636 | 2g34 | 1 | 187 | 1.5E-7 |
| 55 | g15239.t1 | SMART | SM00494 | chi_10 | 318 | 371 | 2.0E-9 |
| 54 | g15239.t1 | SMART | SM00494 | chi_10 | 478 | 530 | 2.8E-12 |
| 56 | g15239.t1 | SMART | SM00494 | chi_10 | 559 | 613 | 1.8E-8 |
| 50 | g15239.t1 | SMART | SM00636 | 2g34 | 691 | 1036 | 6.4E-148 |
| 52 | g15239.t1 | SMART | SM00636 | 2g34 | 1145 | 1490 | 4.8E-149 |
| 53 | g15239.t1 | SMART | SM00494 | chi_10 | 1579 | 1632 | 2.2E-12 |
| 49 | g15239.t1 | SMART | SM00636 | 2g34 | 1696 | 2041 | 6.6E-143 |
| 32 | g15239.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 208 | 8.05E-40 |
| 22 | g15239.t1 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 87 | 158 | 1.53E-13 |
| 27 | g15239.t1 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 319 | 370 | 9.42E-15 |
| 28 | g15239.t1 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 478 | 532 | 1.86E-14 |
| 26 | g15239.t1 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 561 | 613 | 3.66E-12 |
| 31 | g15239.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 689 | 1049 | 5.62E-97 |
| 21 | g15239.t1 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 936 | 1007 | 2.9E-20 |
| 29 | g15239.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1144 | 1522 | 1.74E-97 |
| 23 | g15239.t1 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 1390 | 1461 | 7.94E-18 |
| 25 | g15239.t1 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 1580 | 1633 | 8.89E-15 |
| 30 | g15239.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1691 | 2054 | 1.1E-99 |
| 24 | g15239.t1 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 1941 | 2012 | 2.9E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005576 | extracellular region | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
