General information for g15239.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable chitinase 10.
Parent gene
- The parent gene g15239 is located on chr_4: 4614239..4615409 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15239 | g15239.t2 | isoform | g15239.t2 | 4606157 | 4614239 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon1 | 4606157 | 4606180 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS1 | 4606157 | 4606180 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon2 | 4606246 | 4606457 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS2 | 4606246 | 4606457 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon3 | 4606513 | 4607442 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS3 | 4606513 | 4607442 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon4 | 4607497 | 4607609 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS4 | 4607497 | 4607609 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon5 | 4607706 | 4610185 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS5 | 4607706 | 4610185 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon6 | 4610241 | 4610586 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS6 | 4610241 | 4610586 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon7 | 4610663 | 4611028 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS7 | 4610663 | 4611028 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon8 | 4611093 | 4611928 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS8 | 4611093 | 4611928 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon9 | 4611985 | 4612154 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS9 | 4611985 | 4612154 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon10 | 4612234 | 4612602 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS10 | 4612234 | 4612602 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon11 | 4612659 | 4612955 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS11 | 4612659 | 4612955 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon12 | 4613015 | 4613935 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS12 | 4613015 | 4613935 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon13 | 4613995 | 4614060 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS13 | 4613995 | 4614060 |
| chr_4 | g15239 | g15239.t2 | exon | g15239.t2.exon14 | 4614122 | 4614239 |
| chr_4 | g15239 | g15239.t2 | cds | g15239.t2.CDS14 | 4614122 | 4614239 |
| chr_4 | g15239 | g15239.t2 | TSS | g15239.t2 | NA | NA |
| chr_4 | g15239 | g15239.t2 | TTS | g15239.t2 | NA | NA |
Sequences
>g15239.t2 Gene=g15239 Length=7248
ATGATTTTAAAATTTATGAGCTTATTGCTCATTGTTCACATCCATGCAGTTCCATATAGA
TTTGTTGAAAATCTAGAAGAGAGACCAACTGAATCTTTTGTTAGATCATCAGTTGAATTC
GTCCCTGAAAATGATCAAACTCATTCAAATTTAAGAGTTCAAGGACTTGGCATGACTGAT
GATCATTATGGATCATCATTTTCAAGAGCTGCTGTTGAAAGTATTCCTAGGACTGTTGCC
ACACAATATCTTCCATTGCGTTCAGCTGTTGAATACAATCCAGGAATTGAAAATTTTGCT
CATCTTCGATCACAGCGAGAGCAATTTCTTGATATTGTAATTCCAACTCGTGGTCGTCAA
TCACGTGCTTTTGATCTTGAAGCTTATATTATACCATCAAATATTTATGACACTGATCCA
GAGTATTATCGCATTGGTTCACCATATCAACAAATTATTGATTCAGAAACATATGAACGA
CTTCAAACACAAGTTCCTCAAAATTCAAATATGAATACTCGCATGATGGGTGATTTAAAA
AAGAAAGATTATAAAGTTGTCTGTCATACGACAAATTGGGCATTCTATCGTAAAAGTGAA
GGAAAATTTGTGCCTGAAAATCTCGATTTCAGTCTTTGTACTCATGTCATTTATTCCTTT
GCAACTCTCGATCCAGAACAATTTATTATGCTTGAATTTGATCCATGGGCTGATGTTGAA
AATAAACTATATCAAAGAACTGTCAGGTTAGCTGATAGCAAGCCAGTATTGCTTGCTGTT
GGTGGATGGACTGATTCGACTGGTGACAAATATAGCAAACTTGTGGCAAGCAAAAAACTA
AGAGCAAATTTCATTGATAACGCTGTGCCATTTTTGAAACGTTTTGGATTTTCTGGTCTT
CATGTTGATTGGAATTATCCAGCATGTCCACAAAGTGATTGTAAAACAGGCGACGCAAAA
GACAAAGCAAATTTTGCTCAATTTATACAAGAATTGAGACGATCATTGCAACAATCAGAT
TTAATGCTGAGTATTTCAGTATCTGGTTATAAAGAAATTATCACTGAAGGTTATGACTTT
GTTTCACTCTCAAAAAATGTTGATTTTATGACTGTTATGACTTATGATTATCATGGAGCT
TGGGAAAGTGTTACTGGTCATGTTAGTCCACTTTATGGAAGTTCGAATGATAAATATCCA
CAATATAACACTGATTATACAATAAAATTATTGATTGAATCTGGTGCTGATAAAGAAAAA
ATTATCATGGGAGTTCCATTCTATGCACAATCATTCACACTTCGCTCACCAAATAGTCGT
GGTTATAATTCGCAATCATACGGCCCAGGATCGCCAGGCGAATTTACATCACAACCAGGA
ATGCTTGCATATCATGAAATTTGTGCAATGTTGAAGAAACCAGGTTACAAAAAAGGCAAC
GATCCGAGTGGAAATTCAGGACCGTACATTACAGATGGAAAAATTTGGGCTGGCTTTGAT
GATCCTGAATGGGTACAAAAGAAAGCAAAATATGTCGTTGATAATGAACTTGGTGGTGTT
TCAGCTTGGACAGTTGACCTTGATGATTTCAATAATAAATGTTGTGTTGAAGCTTTTCCA
TTGTTGAAGGCAATCAATCGTGGTTTAGGAAGAATTAATTCAAATGCACCAACTGGTTAT
GATTGTAAAAAACCATCAGTGGTCACTCCACCACCAGTAATTATGCAAACAACTGCAGAT
TCTGGTTTTGCTGGCATTCCAATGGATGATTCTGCAACAAAATCAACAACATCATCATGG
TGGACACCAAGTACAACAACAATGTCAACAACTAGAAAAACGACAACAAGAAAGCCAGCA
GTTCAATCTACGACTAAAAAGCCATTTTATAAACCATCAGGAACTAAACCATCATCAACT
TCGTCAACATCGATTCCAGTTCCAGTCAATGTCGTTCCTGATGTTGTTGATAATGAACCA
TGCATAGAAGGTCAATATACTGCACATCCTGCAGAATGCAATCAATATATTATTTGCATC
CGTGGGGAAAAAATCGCACGTCATTGTCCTGGTGGATTACATTGGAATGATATGCATAAA
CATTGTGATTGGCCAGAAAGTGCAAATTGCGTTGCAGGTGAAAATGCAGTTCAGGAAGAT
GAAATTATTCCAAGTTCTACAACAACATCTACCACAACAACAATGAGAACAAGGAAAACT
ACGAAAAATACAAGAACAACAACAACCACAAGAATAACAACTGCAAAACGTACAAGACCG
CCAACAACTACAATCACAACTACTATGATGACAACGACAGTACCAACAACTACTAGAAGA
ATTACAACCAAACGAACAAAAAGACCAACGACAACAGTTAGACCAACATATTATGAAACT
ACAACCACAACAATGCCACCAGAAACAAGCAGTAAAAAGCCAGTTAGAAAACCAACGAAA
TGCGTTAATGGTGAATATTTACCACATAAAGATTGTGCAAAATATTACATTTGTACAAAT
AATAGAAAAGTTCCAATGTCATGTCCTGATGGATTGCAATATAACCATGAAATCAAAAAT
TGTGATTATGAAGAAAAAGTCAAATGTGTATCAAGGAAAAAATATCAAAAACTTCTTGAA
AAACTTTATAGAAAAACTGGAATTTATACTGCAGCACTTTTACGAGCAACAGCTGGTGAG
ACATGCAACAATGGTGAAAGATTTGCACCATTCCCAGGTGATTGTAGGTATTACCTAGAA
TGTGTTCATGAAAAAATGTTTAAACGTGATTGTCCAAGTGGTTTAATTTGGAATCCAAAT
GCAAATAATTGCGATTGGGAACAAAATTATAAATGTGATCATCCAGAAGGTGAAGAAGAA
GAAGAGGAAGATTATGACGAAGATGATGAAGAAGATGAAGCTGAAGTTATTACACAAAAT
GAAGTTTTTCATGAATTTTCACCGGCATCATCACCTAAACCTGCTGCACCATCAAAACCT
TCAAAGCCAGTCACATCAGCATCAAAACCATCAGTTGGCACAGGATTAATGACAATTCCA
GTTAATGATGAAATTGAACCATTGAAAGGAAATTTAAAACTTGTCTGCTATTTCACCAAT
TGGGCGTGGTATAGACCAGGTGATGGAAAATATCTACCAAGTGATATTGATGCAAATCTT
TGTACACACATTGTCTATGGTTTTGCTGTGTTAAATTATGATCAATTGACAATTACAACA
CATGATTCATGGGCTGATATTGACAATCGATTCTATGAGCGTGTTGTTGAGTACAAAAAT
AAAGGAATTAAAGTGTCACTTGCTATTGGTGGATGGAATGATTCTGCTGGTGACAAATAC
AGTCGACTTGTTAGAAATCCAGCTGCAAGAAGAAAGTTCATCAATCATGTTGTTGGATTC
TTAGAGAAATATGGCTTTGATGGTTTGGATCTTGATTGGGAATATCCAGTATGTTGGCAA
GTTGATTGCAAGAAAGGTTTTGCTGATGAAAAGCAACATTTTGCTGCTTTTGTTAAAGAA
CTTTCAGAAGCATTTAAACCAAAAGGATTGTTATTGTCAGCTGCTGTTTCACCTAGTAAA
ACTGTCATCGACGCTGGCTATGAAGTCAAAGATTTATCACGCTATTTGAATTGGATTGCT
ATCATGTGCTACGATTATCATGGACAATGGGATAAGAAAACTGGACATGTTGCACCACTT
TATTATCATCCTGATGACGAAGTTAACTTTTTCAATACCAACTATTCAATAAATTATTGG
CTTCAACTTGGAACACCAAAAGAAAAACTCATCATGGGAATGCCACTTTATGGTCAATCA
TTTACACTTGCTGATGCAAAGAAGAATGGATTGAATGCTGGAGCACCAGGACCAGGACAA
GCTGGCGAATTTACAAGAGCTGCTGGATTCCTTTCATACTATGAAATTTGTGATCGAATT
TTCAATCGTGGATGGACAGTTGTTCAAGACCCTGAAGGCAGAATGGGACCATATGCTTAT
AGTGGCAATCAATGGGTTTCATTTGATGATCAAGCAATGTTGAAGAAAAAAGTTCAGTTT
ATTAAAGAAATGGGAATTGGAGGAGGAATGATTTGGGCACTTGATTTGGACGATTTCCGT
GGAAAATGTGGTCAAGGAAAACATCCATTATTGAAAGTCATTCATGCCGAATTGCAAAAT
GCTAGCGTTGACGTAGAAGAGGATGAAGAATATGAAGATGAAGAGAATGAACCACAACAA
CCACCATCACATTCTGAAACGCCTGTTGTCATTATTCCAGTAGATAGACCTGAAGAAAAT
GAAGTTGTTGTTGGACAAGAAGAAACTGAAGCAGTTCCAGATGAAGAAAATGAAGGTGCA
GGACAAGAAACGGAAGAAGAAGAGGAAGATTATGATGATGAAGATACAAATGAAGTTGAT
GAGTTCGATGGCCAATATAAAGTTGTCTGCTACTTTACAAATTGGGCATGGTATCGTCCT
GGAATTGGCAAATTTAAACCAGAAGATGTTGATCCCGATTTGTGTACACACATTGTCTAT
GGTTTTGCTGTTCTTGATAGAGACACATTAACAATTAAACCTCATGATTCTTGGGCTGAT
ATTGATAATAAATTTTATGAAAAAGTCACAGAATATAAAAAACGAGGAGTTAAAGTTACA
ATTGCTATTGGTGGTTGGAATGACTCTGCTGGTGATAAATACAGTCGACTTGTACTGAGC
ACAGAAGCAAGACGAAGATTTGTAAGACATGTGACAGAATTTATTGAAAAATACAACTTT
GATGGCTTAGATCTCGATTGGGAATATCCAGTATGTTGGCAAGTTGAATGCAATAAAGGA
AAACCAGAAGAAAAGCAAGCTTTCTCAATGTTGGTCAAAGAACTCTCAGAAGCATTTAAG
CCTAAAGGACTTTTGCTTTCAACAGCTGTTTCACCTAGCAAAATGGTCATCGACGCTGGC
TATGAAGTCAAAGTTTTATCAGACTATTTTGATTGGATTTCTGTCATGTGCTACGATTAT
CATGGTCAATGGGACAAAAAGACTGGACATGTTGCACCAATGTATATTCATCCAGAATCA
TCAATACCAACTTTCAATGCCAATTACACAATGAATTATTGGATCGAAAAAGGAGCTGAT
CCAAGAAAATTAATTATGGGTATGCCAATGTATGGTCAATCATTCTCACTTGCTGATAGA
AATAATGTTGGACTCAATAGTCCATCTTATGGTGGTGGTGAAGCTGGTGAAGATACAAGG
GCTCGTGGTTTCTTATCATACTATGAAATTTGCATGAGAATTAAAAGAAAGAATTGGAAA
GTAGTAAAAGATTCACGTGGAAGAATTGGTCCATATGCATATAGTGGTGATCAATGGGTT
TCATTTGATGATGTTCATATGATTCGTCATAAGAGTGAATATGTTAAAGCTTTAGGACTT
GGTGGTGCTATGATTTGGGCACTTGATCTTGATGATTTCAAAAACTCATGTGAATGTGAA
GAATATCCGCTTCTTCGTACAATCAATCGTGTTTTAAGAAATTATCCAGGATCACATAAA
GACTGTACACTTGAAAATCGTAAGCATTACAAACCAACAGCTGAAAAGACAACAAAGAAA
CCAATAATTCCTGTAACAACGACAACAAAACCAAGAAAAACAACAGAAGCACCAGTGCAA
GAAGAAGAATATGATGAATATGATGAAGAAAATGAAGTTTCTGTTCCAGTTGATACAAGA
AGTTGTAATGGAAGAAGTTTTAGACCACATGAAAAATATTGTGATAAATATTACATGTGT
GATAATGGAAATTCAATTTTATCATCATGTAGTCATGGTCTTCATTGGAATGCAGTTATG
AATATTTGTGATTGGCCAATAAATGTTAAATGTACACTTAAGCCACATGAAGGATCAAAT
GATGAAGAAGTTGAAGCTGAAAATGAAGTTTCATCTGGTGGAAATAAGCCATCATATTCG
CCATCATCAACAACACGTAAACCATCAACAACTGCAACAACAAAAAAACCAAGACCAACA
AAACCACCAATTGTCAGTGATCCATTTGTGCCAACAGGAAATAATGAATTTATGGTTGTG
TGCTATTTCACAAACTGGGCATGGTATCGTCCAGGAATTGGTAAATATAAGCCAGATGAT
ATTGATACAACTCTATGCACACATATTGTTTATGGCTTTGCAACACTCAATAGTGAAACA
TTGACAATTAGAATTCATGATTCATGGGCTGATATTGACAACAACTTTTATACAAGAGTC
TCAGGGTTGAAGGAGAAAGGTGTTAAAGTTAGCATCGCTCTTGGTGGATGGAATGATTCA
TTAGGTGACAAATATAGTCGTTTAGTGAGAAATCCAGAAGCAAGAAAAAGATTCATTGTT
AATGTCATTGAATTTATGGAAAAGTATGGCTTTCAAGGTCTTGATCTTGATTGGGAATAT
CCAGTATGTTGGCAAGTTGATTGTACAAAAGGAAAACCAGATGAAAAACAAGCATTTACT
GCTTTCGTTAAAGAACTTTCAGAAGCATTTAAACCAAAAGGATTGTTATTGTCAGCTGCT
GTTTCACCTAGTAAAAAAGTCATCGATGCTGGCTATGAAGTCAAAGATTTATCACGCTAT
TTTGATTGGATTGCTATAATGTGTTATGATTATCATGGACAATGGGATAAGAAAACTGGA
CATGTTGCACCACTTTATGAACATCCTGATGATTGGGAAAAAACTTTCAATGCCAATTTC
ACAATTAATTATTGGATTGAAAAAGGTGCACCACCAAATAAACTTGTTATGGGAATGCCA
ACTTATGGACAATCATTTTCATTGGAGAAAGTTGATAATAATGGTTTGAATGAAAAAGCA
CCAGGACCAGGACAAGCTGGTGAATTTACAAGATCTGCTGGATTTTTGGCTTTCTATGAA
ATTTGTCATAAAATCAATAGCGGTGGATGGACCGTTGTGAAAGATCCTGAAGGCAGAATG
GGACCATATGCATACAATCATCGTCAATGGGTTTCTTATGATGATGTTGAACAAATTCGA
TTGAAATCTAAATTTGTTAAAGATATGAAGCTTGCTGGTGCTATGATTTGGGCACTTGAT
CTTGACGATTTCCGTAATCGATGTGGTTGTGGAACTCATCCGTTATTGTCAACAATAAAT
GCAGAATTGGGTAGAATAAATACACCACGATTATCTGACTGTACTTAA
>g15239.t2 Gene=g15239 Length=2415
MILKFMSLLLIVHIHAVPYRFVENLEERPTESFVRSSVEFVPENDQTHSNLRVQGLGMTD
DHYGSSFSRAAVESIPRTVATQYLPLRSAVEYNPGIENFAHLRSQREQFLDIVIPTRGRQ
SRAFDLEAYIIPSNIYDTDPEYYRIGSPYQQIIDSETYERLQTQVPQNSNMNTRMMGDLK
KKDYKVVCHTTNWAFYRKSEGKFVPENLDFSLCTHVIYSFATLDPEQFIMLEFDPWADVE
NKLYQRTVRLADSKPVLLAVGGWTDSTGDKYSKLVASKKLRANFIDNAVPFLKRFGFSGL
HVDWNYPACPQSDCKTGDAKDKANFAQFIQELRRSLQQSDLMLSISVSGYKEIITEGYDF
VSLSKNVDFMTVMTYDYHGAWESVTGHVSPLYGSSNDKYPQYNTDYTIKLLIESGADKEK
IIMGVPFYAQSFTLRSPNSRGYNSQSYGPGSPGEFTSQPGMLAYHEICAMLKKPGYKKGN
DPSGNSGPYITDGKIWAGFDDPEWVQKKAKYVVDNELGGVSAWTVDLDDFNNKCCVEAFP
LLKAINRGLGRINSNAPTGYDCKKPSVVTPPPVIMQTTADSGFAGIPMDDSATKSTTSSW
WTPSTTTMSTTRKTTTRKPAVQSTTKKPFYKPSGTKPSSTSSTSIPVPVNVVPDVVDNEP
CIEGQYTAHPAECNQYIICIRGEKIARHCPGGLHWNDMHKHCDWPESANCVAGENAVQED
EIIPSSTTTSTTTTMRTRKTTKNTRTTTTTRITTAKRTRPPTTTITTTMMTTTVPTTTRR
ITTKRTKRPTTTVRPTYYETTTTTMPPETSSKKPVRKPTKCVNGEYLPHKDCAKYYICTN
NRKVPMSCPDGLQYNHEIKNCDYEEKVKCVSRKKYQKLLEKLYRKTGIYTAALLRATAGE
TCNNGERFAPFPGDCRYYLECVHEKMFKRDCPSGLIWNPNANNCDWEQNYKCDHPEGEEE
EEEDYDEDDEEDEAEVITQNEVFHEFSPASSPKPAAPSKPSKPVTSASKPSVGTGLMTIP
VNDEIEPLKGNLKLVCYFTNWAWYRPGDGKYLPSDIDANLCTHIVYGFAVLNYDQLTITT
HDSWADIDNRFYERVVEYKNKGIKVSLAIGGWNDSAGDKYSRLVRNPAARRKFINHVVGF
LEKYGFDGLDLDWEYPVCWQVDCKKGFADEKQHFAAFVKELSEAFKPKGLLLSAAVSPSK
TVIDAGYEVKDLSRYLNWIAIMCYDYHGQWDKKTGHVAPLYYHPDDEVNFFNTNYSINYW
LQLGTPKEKLIMGMPLYGQSFTLADAKKNGLNAGAPGPGQAGEFTRAAGFLSYYEICDRI
FNRGWTVVQDPEGRMGPYAYSGNQWVSFDDQAMLKKKVQFIKEMGIGGGMIWALDLDDFR
GKCGQGKHPLLKVIHAELQNASVDVEEDEEYEDEENEPQQPPSHSETPVVIIPVDRPEEN
EVVVGQEETEAVPDEENEGAGQETEEEEEDYDDEDTNEVDEFDGQYKVVCYFTNWAWYRP
GIGKFKPEDVDPDLCTHIVYGFAVLDRDTLTIKPHDSWADIDNKFYEKVTEYKKRGVKVT
IAIGGWNDSAGDKYSRLVLSTEARRRFVRHVTEFIEKYNFDGLDLDWEYPVCWQVECNKG
KPEEKQAFSMLVKELSEAFKPKGLLLSTAVSPSKMVIDAGYEVKVLSDYFDWISVMCYDY
HGQWDKKTGHVAPMYIHPESSIPTFNANYTMNYWIEKGADPRKLIMGMPMYGQSFSLADR
NNVGLNSPSYGGGEAGEDTRARGFLSYYEICMRIKRKNWKVVKDSRGRIGPYAYSGDQWV
SFDDVHMIRHKSEYVKALGLGGAMIWALDLDDFKNSCECEEYPLLRTINRVLRNYPGSHK
DCTLENRKHYKPTAEKTTKKPIIPVTTTTKPRKTTEAPVQEEEYDEYDEENEVSVPVDTR
SCNGRSFRPHEKYCDKYYMCDNGNSILSSCSHGLHWNAVMNICDWPINVKCTLKPHEGSN
DEEVEAENEVSSGGNKPSYSPSSTTRKPSTTATTKKPRPTKPPIVSDPFVPTGNNEFMVV
CYFTNWAWYRPGIGKYKPDDIDTTLCTHIVYGFATLNSETLTIRIHDSWADIDNNFYTRV
SGLKEKGVKVSIALGGWNDSLGDKYSRLVRNPEARKRFIVNVIEFMEKYGFQGLDLDWEY
PVCWQVDCTKGKPDEKQAFTAFVKELSEAFKPKGLLLSAAVSPSKKVIDAGYEVKDLSRY
FDWIAIMCYDYHGQWDKKTGHVAPLYEHPDDWEKTFNANFTINYWIEKGAPPNKLVMGMP
TYGQSFSLEKVDNNGLNEKAPGPGQAGEFTRSAGFLAFYEICHKINSGGWTVVKDPEGRM
GPYAYNHRQWVSYDDVEQIRLKSKFVKDMKLAGAMIWALDLDDFRNRCGCGTHPLLSTIN
AELGRINTPRLSDCT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 53 | g15239.t2 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 186 | 549 | 2.08394E-157 |
| 52 | g15239.t2 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 1034 | 1398 | 0.0 |
| 54 | g15239.t2 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 1488 | 1852 | 1.21554E-171 |
| 51 | g15239.t2 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 2039 | 2403 | 2.38446E-177 |
| 41 | g15239.t2 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 186 | 547 | 8.1E-124 |
| 42 | g15239.t2 | Gene3D | G3DSA:3.10.50.10 | - | 427 | 499 | 8.1E-124 |
| 36 | g15239.t2 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 654 | 718 | 2.0E-16 |
| 34 | g15239.t2 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 811 | 881 | 3.1E-13 |
| 37 | g15239.t2 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 894 | 960 | 1.1E-10 |
| 38 | g15239.t2 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1034 | 1397 | 1.2E-144 |
| 44 | g15239.t2 | Gene3D | G3DSA:3.10.50.10 | - | 1276 | 1348 | 1.2E-144 |
| 40 | g15239.t2 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1488 | 1851 | 1.2E-142 |
| 43 | g15239.t2 | Gene3D | G3DSA:3.10.50.10 | - | 1730 | 1802 | 1.2E-142 |
| 35 | g15239.t2 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 1915 | 1978 | 4.5E-16 |
| 39 | g15239.t2 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 2039 | 2402 | 4.0E-144 |
| 45 | g15239.t2 | Gene3D | G3DSA:3.10.50.10 | - | 2281 | 2353 | 4.0E-144 |
| 74 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 594 | 645 | - |
| 65 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 749 | - |
| 70 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 974 | - |
| 73 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 956 | 974 | - |
| 71 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 1010 | - |
| 69 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1404 | 1477 | - |
| 68 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1444 | 1477 | - |
| 72 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1888 | 1912 | - |
| 66 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1980 | 2027 | - |
| 67 | g15239.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1991 | 2017 | - |
| 14 | g15239.t2 | PANTHER | PTHR11177 | CHITINASE | 158 | 737 | 0.0 |
| 20 | g15239.t2 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 158 | 737 | 0.0 |
| 13 | g15239.t2 | PANTHER | PTHR11177 | CHITINASE | 789 | 869 | 0.0 |
| 19 | g15239.t2 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 789 | 869 | 0.0 |
| 12 | g15239.t2 | PANTHER | PTHR11177 | CHITINASE | 900 | 958 | 0.0 |
| 18 | g15239.t2 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 900 | 958 | 0.0 |
| 9 | g15239.t2 | PANTHER | PTHR11177 | CHITINASE | 1016 | 1394 | 0.0 |
| 15 | g15239.t2 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 1016 | 1394 | 0.0 |
| 11 | g15239.t2 | PANTHER | PTHR11177 | CHITINASE | 1467 | 2010 | 0.0 |
| 17 | g15239.t2 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 1467 | 2010 | 0.0 |
| 10 | g15239.t2 | PANTHER | PTHR11177 | CHITINASE | 2022 | 2400 | 0.0 |
| 16 | g15239.t2 | PANTHER | PTHR11177:SF359 | CHITINASE 10-RELATED | 2022 | 2400 | 0.0 |
| 7 | g15239.t2 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 185 | 528 | 6.5E-73 |
| 3 | g15239.t2 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 664 | 710 | 3.7E-11 |
| 4 | g15239.t2 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 823 | 869 | 5.7E-11 |
| 2 | g15239.t2 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 902 | 952 | 1.6E-9 |
| 6 | g15239.t2 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 1033 | 1377 | 6.8E-89 |
| 8 | g15239.t2 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 1487 | 1831 | 4.1E-86 |
| 1 | g15239.t2 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 1922 | 1971 | 4.9E-11 |
| 5 | g15239.t2 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 2039 | 2382 | 9.2E-89 |
| 47 | g15239.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 48 | g15239.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 49 | g15239.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 12 | - |
| 50 | g15239.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 16 | - |
| 46 | g15239.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 2415 | - |
| 63 | g15239.t2 | ProSitePatterns | PS01095 | Chitinases family 18 active site. | 1146 | 1154 | - |
| 64 | g15239.t2 | ProSitePatterns | PS01095 | Chitinases family 18 active site. | 1600 | 1608 | - |
| 77 | g15239.t2 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 658 | 712 | 12.746 |
| 76 | g15239.t2 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 818 | 871 | 12.543 |
| 78 | g15239.t2 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 899 | 954 | 13.025 |
| 75 | g15239.t2 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 1919 | 1973 | 12.962 |
| 58 | g15239.t2 | SMART | SM00636 | 2g34 | 184 | 528 | 3.4E-117 |
| 62 | g15239.t2 | SMART | SM00494 | chi_10 | 659 | 712 | 2.0E-9 |
| 59 | g15239.t2 | SMART | SM00494 | chi_10 | 819 | 871 | 2.8E-12 |
| 61 | g15239.t2 | SMART | SM00494 | chi_10 | 900 | 954 | 1.8E-8 |
| 55 | g15239.t2 | SMART | SM00636 | 2g34 | 1032 | 1377 | 6.4E-148 |
| 56 | g15239.t2 | SMART | SM00636 | 2g34 | 1486 | 1831 | 4.8E-149 |
| 60 | g15239.t2 | SMART | SM00494 | chi_10 | 1920 | 1973 | 2.2E-12 |
| 57 | g15239.t2 | SMART | SM00636 | 2g34 | 2037 | 2382 | 6.6E-143 |
| 31 | g15239.t2 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 184 | 549 | 1.6E-84 |
| 21 | g15239.t2 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 428 | 499 | 1.83E-13 |
| 27 | g15239.t2 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 660 | 711 | 1.12E-14 |
| 28 | g15239.t2 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 819 | 873 | 2.22E-14 |
| 25 | g15239.t2 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 902 | 954 | 4.18E-12 |
| 30 | g15239.t2 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1030 | 1390 | 7.43E-97 |
| 22 | g15239.t2 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 1277 | 1348 | 3.51E-20 |
| 32 | g15239.t2 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1485 | 1863 | 2.2E-97 |
| 23 | g15239.t2 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 1731 | 1802 | 9.31E-18 |
| 26 | g15239.t2 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 1921 | 1974 | 1.05E-14 |
| 29 | g15239.t2 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 2032 | 2395 | 1.44E-99 |
| 24 | g15239.t2 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 2282 | 2353 | 3.36E-19 |
| 33 | g15239.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005576 | extracellular region | CC |
KEGG
Orthology
- This transcript has been annotated with K01183 (chitinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
