General information for g15280.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15280 is located on chr_4: 4814286..4814843 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15280 | g15280.t1 | TSS | g15280.t1 | 4812328 | 4812328 |
| chr_4 | g15280 | g15280.t1 | isoform | g15280.t1 | 4812392 | 4814286 |
| chr_4 | g15280 | g15280.t1 | exon | g15280.t1.exon1 | 4812392 | 4812521 |
| chr_4 | g15280 | g15280.t1 | cds | g15280.t1.CDS1 | 4812392 | 4812521 |
| chr_4 | g15280 | g15280.t1 | exon | g15280.t1.exon2 | 4812707 | 4813141 |
| chr_4 | g15280 | g15280.t1 | cds | g15280.t1.CDS2 | 4812707 | 4813141 |
| chr_4 | g15280 | g15280.t1 | exon | g15280.t1.exon3 | 4813195 | 4813379 |
| chr_4 | g15280 | g15280.t1 | cds | g15280.t1.CDS3 | 4813195 | 4813379 |
| chr_4 | g15280 | g15280.t1 | exon | g15280.t1.exon4 | 4813436 | 4813559 |
| chr_4 | g15280 | g15280.t1 | cds | g15280.t1.CDS4 | 4813436 | 4813559 |
| chr_4 | g15280 | g15280.t1 | exon | g15280.t1.exon5 | 4813677 | 4813762 |
| chr_4 | g15280 | g15280.t1 | cds | g15280.t1.CDS5 | 4813677 | 4813762 |
| chr_4 | g15280 | g15280.t1 | exon | g15280.t1.exon6 | 4814071 | 4814286 |
| chr_4 | g15280 | g15280.t1 | cds | g15280.t1.CDS6 | 4814071 | 4814286 |
| chr_4 | g15280 | g15280.t1 | TTS | g15280.t1 | 4814423 | 4814423 |
Sequences
>g15280.t1 Gene=g15280 Length=1176
ATGAAATCAAAAATTTTTATTGCTGTTTTGCTATCAGCTTTGAGTAGCTTAGCAAACGCA
CATTATTCTGGTCCATTTTTGTTTTGGGGTGTCGAAAATCTCAACAATATGAAAATTCCA
ACTTTGCAAGCAATTGATGATTTAAGTCTTAGAGATATTTACTCAAAAGCATCAGCAATT
GTGATTTTCATCAGAAATGCAACAACAAAATTAAGTTATGAAAATTTTCCTGAATTGTCT
GACATCATTAGCAAAAATGAATGGCTTTACTTACCACAAGAAACTTTATCATCTGATCCA
TTGGAATATAACATAAATGCTGAAGTTTTTACATTAACTGGACCTGTAATTATGCAAGAT
AACGAAATTGCAGCTTTTTATCGTGATGCTCAAATAAATTATGGAAATAAAAATGTTCTT
GGAATTTTAGCAGCTCGAAATGAAAATAATGAACATTTGATATCAAAAAGACAAGCAAGA
GAAGTAATAACTGAAAATTATGATATTTCTACAACACCTGCAACACCTGATGAACAAGAA
GATAATCGAATTTATGCTGTTAGAGGAAAAATAATTTTCTATACAGCTTCAATACCAGTC
TTTAAATTCACAAATAAAAAAGGTGAAAGCGAAAGTATTAAACTTCAAAAACATGCAGCA
GTTACTCATGATGATAGACCCAATAAAGAAATTCCAGGACAATTAGATCAGCGAAAACTT
GTTGTCAAATATGTTTTAAGTGATGACATTATTTATTTGAGATTCGTGTTTACCGTATCA
GGTGGAAGCTGGTCAATGAATACAATTGAATTAGAATATCCTGATAATCCTCAAATTCCA
AAAACAATGACAATTGTTGGAAGACCACCAGCAGCTCCCGTTGGTAATTCTTCATTCGTT
TGTGGTGACACTTTTATTTATCAAAATGGCGCTGCTTCATTGACTTTAAAAAATGTTCAG
ATTCAACCATTTATGAGTACAAACAATATAAGCTTTTTCGGAACACCAATGGATTGCATT
GGAGTCACATCACCTGCGATTATCGCTGGAATTTTCACAACATCAATCTTACTCATTGTT
CTATCAATCGCATTAACTGCCATAATGGATATTCACACACCAAATCGATTTGAAAACCGA
AATTCAAAGCAGTTGACTTTCACAATTCAAGAGTAA
>g15280.t1 Gene=g15280 Length=391
MKSKIFIAVLLSALSSLANAHYSGPFLFWGVENLNNMKIPTLQAIDDLSLRDIYSKASAI
VIFIRNATTKLSYENFPELSDIISKNEWLYLPQETLSSDPLEYNINAEVFTLTGPVIMQD
NEIAAFYRDAQINYGNKNVLGILAARNENNEHLISKRQAREVITENYDISTTPATPDEQE
DNRIYAVRGKIIFYTASIPVFKFTNKKGESESIKLQKHAAVTHDDRPNKEIPGQLDQRKL
VVKYVLSDDIIYLRFVFTVSGGSWSMNTIELEYPDNPQIPKTMTIVGRPPAAPVGNSSFV
CGDTFIYQNGAASLTLKNVQIQPFMSTNNISFFGTPMDCIGVTSPAIIAGIFTTSILLIV
LSIALTAIMDIHTPNRFENRNSKQLTFTIQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g15280.t1 | PANTHER | PTHR12471:SF4 | AGAP001624-PA | 4 | 390 | 2.3E-83 |
| 4 | g15280.t1 | PANTHER | PTHR12471 | VACUOLAR ATP SYNTHASE SUBUNIT S1 | 4 | 390 | 2.3E-83 |
| 2 | g15280.t1 | Pfam | PF05827 | Vacuolar ATP synthase subunit S1 (ATP6S1) | 256 | 388 | 1.1E-23 |
| 11 | g15280.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 12 | g15280.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 13 | g15280.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 15 | g15280.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 10 | g15280.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 345 | - |
| 14 | g15280.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 346 | 368 | - |
| 9 | g15280.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 369 | 391 | - |
| 8 | g15280.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 1 | g15280.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 7 | g15280.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 22 | - |
| 5 | g15280.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 6 | g15280.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 346 | 368 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1902600 | proton transmembrane transport | BP |
| GO:0033180 | proton-transporting V-type ATPase, V1 domain | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
