General information for g15283.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Gastrula zinc finger protein XlCGF46.1 .
Parent gene
- The parent gene g15283 is located on chr_4: 4826403..4827286 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15283 | g15283.t1 | TTS | g15283.t1 | 4824965 | 4824965 |
| chr_4 | g15283 | g15283.t1 | isoform | g15283.t1 | 4825077 | 4827286 |
| chr_4 | g15283 | g15283.t1 | exon | g15283.t1.exon1 | 4825077 | 4825211 |
| chr_4 | g15283 | g15283.t1 | cds | g15283.t1.CDS1 | 4825077 | 4825211 |
| chr_4 | g15283 | g15283.t1 | exon | g15283.t1.exon2 | 4825271 | 4825648 |
| chr_4 | g15283 | g15283.t1 | cds | g15283.t1.CDS2 | 4825271 | 4825648 |
| chr_4 | g15283 | g15283.t1 | exon | g15283.t1.exon3 | 4825741 | 4825793 |
| chr_4 | g15283 | g15283.t1 | cds | g15283.t1.CDS3 | 4825741 | 4825793 |
| chr_4 | g15283 | g15283.t1 | exon | g15283.t1.exon4 | 4825859 | 4825959 |
| chr_4 | g15283 | g15283.t1 | cds | g15283.t1.CDS4 | 4825859 | 4825959 |
| chr_4 | g15283 | g15283.t1 | exon | g15283.t1.exon5 | 4826403 | 4827049 |
| chr_4 | g15283 | g15283.t1 | cds | g15283.t1.CDS5 | 4826403 | 4827049 |
| chr_4 | g15283 | g15283.t1 | exon | g15283.t1.exon6 | 4827140 | 4827286 |
| chr_4 | g15283 | g15283.t1 | cds | g15283.t1.CDS6 | 4827140 | 4827286 |
| chr_4 | g15283 | g15283.t1 | TSS | g15283.t1 | 4827376 | 4827376 |
Sequences
>g15283.t1 Gene=g15283 Length=1461
ATGGAGTTGGTGCAAGAAGCTCATATGACGCCTGATGAGCTCATCAACAAATGTGTATGT
TGCTTTCAAGTCTTTAAAAAACAGCAAAAAATTGTGAATTTAAATTTGGATCTTGAAATG
ATTTTTAGCGACGTGATACAGACGGAATTTCTTTCTAAAGCTTACACTCGCTTTATTTGT
TCACCATGCAATGACCAACTTCTTCATTTTTCAAAATTCAAAGCGGAACTTTCATCAAAT
CAGCAACGTTTGCATGAGTCATTGGTTGCATTGGGTGAAATAACAATTGAAGAAATAAAA
GTTGAGCCGGATGAAGAATTTGATGCTGATGAGTACATTGAGGATGAAAGTGCAGTTGAA
TGGAAGGTTGAAAGTTTAGATGAAGCAGTTGAAGAGCCTTCATATGAATATGTTGAAGTT
TTAAATAGCAAAAGAAGTCCAAAAGTACGCAAAACAAATCCAGTTCAATATTTTACATGT
CAAATTTGTAAAGATCGAACTTTTACATCACGATATCGTTATCGTAATCATTTGGAAACT
GAACATGCTGATAGAAAAAATAACAGTCAATATTGGACTATGACAACATTGGGTAAAAAA
GAAATTGCAACTGTGAGCTCGAAAGAATTGTGTCCAGTTTGTGCAAAATGGATTACATCG
AGTTCTATGGATGCTCATATCAAAAGAATGCATTCAGATGAATATTTTTACTTTTGCGAT
TTATGTCCTCAAAAGTTTAAAGTTAAACGTGATATTCAGTATCATGTTAAGAAACATATG
CAAAAGGAATCAAGACAACGTTATCAATGCGAATATTGTGAAAATTCATACTTGTCAACT
TGGGCTTTGAGAAATCATTTCACAATGACTCATGCTGATATTGAAAAGGAATTTGTTTGC
GAATGTGGAGCTGCATTTAAAACACAAATGAGATTAAATTATCATAGGAAAATCGTCCAT
GAAAAAGGCGAATATCCATGCACAATTTGCAACAAAATGTTTACATCATTGCCTAATTGG
CGACTGCACAACGCTCAATTCCATAAAACTAAAGATCCATGTGTTGTTTGTGGTAAACTT
GTTGCACCAGGAACATTTATGAAGCGTCACATGCAAAGTCATGCACCAGCATCATTTGAA
TGCACCATTGAAGGTTGCACAAAAGTTTTCTTTGGCAAAACAGCGCTGACAAATCATCAA
GCGAGTGTACATGGCATGGGTGAAAGAGTCAGCTGTGAAGTTTGTGGACAAAGTTTCAGT
ACAAAGAAAGTTTTGAGCAAGCATTTTGCAAGAAATCACACAGTTACCGAAAGAGTTCCT
TGTGAGATTCCTGGTTGCAATCATACAGCTGCACGCAAAGATTATTTCATTGCGCATGTT
AAAACACATAAAGATATCAGTGAAGAAGAAAAAGCTGCTTATATTGTCAAAATTCGTGCT
ATGAAAGATTTGACGTGGTAA
>g15283.t1 Gene=g15283 Length=486
MELVQEAHMTPDELINKCVCCFQVFKKQQKIVNLNLDLEMIFSDVIQTEFLSKAYTRFIC
SPCNDQLLHFSKFKAELSSNQQRLHESLVALGEITIEEIKVEPDEEFDADEYIEDESAVE
WKVESLDEAVEEPSYEYVEVLNSKRSPKVRKTNPVQYFTCQICKDRTFTSRYRYRNHLET
EHADRKNNSQYWTMTTLGKKEIATVSSKELCPVCAKWITSSSMDAHIKRMHSDEYFYFCD
LCPQKFKVKRDIQYHVKKHMQKESRQRYQCEYCENSYLSTWALRNHFTMTHADIEKEFVC
ECGAAFKTQMRLNYHRKIVHEKGEYPCTICNKMFTSLPNWRLHNAQFHKTKDPCVVCGKL
VAPGTFMKRHMQSHAPASFECTIEGCTKVFFGKTALTNHQASVHGMGERVSCEVCGQSFS
TKKVLSKHFARNHTVTERVPCEIPGCNHTAARKDYFIAHVKTHKDISEEEKAAYIVKIRA
MKDLTW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 28 | g15283.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 138 | 234 | 1.8E-5 |
| 24 | g15283.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 235 | 294 | 2.5E-9 |
| 25 | g15283.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 295 | 352 | 4.5E-9 |
| 26 | g15283.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 353 | 405 | 1.7E-6 |
| 27 | g15283.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 406 | 475 | 2.3E-8 |
| 1 | g15283.t1 | PANTHER | PTHR24376:SF119 | SI:CABZ01069013.3-RELATED | 18 | 401 | 7.5E-53 |
| 3 | g15283.t1 | PANTHER | PTHR24376 | ZINC FINGER PROTEIN | 18 | 401 | 7.5E-53 |
| 2 | g15283.t1 | PANTHER | PTHR24376:SF119 | SI:CABZ01069013.3-RELATED | 256 | 465 | 7.5E-53 |
| 4 | g15283.t1 | PANTHER | PTHR24376 | ZINC FINGER PROTEIN | 256 | 465 | 7.5E-53 |
| 22 | g15283.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 239 | 259 | - |
| 20 | g15283.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 270 | 291 | - |
| 23 | g15283.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 327 | 348 | - |
| 21 | g15283.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 381 | 404 | - |
| 19 | g15283.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 412 | 433 | - |
| 31 | g15283.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 237 | 264 | 9.411 |
| 32 | g15283.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 268 | 296 | 8.663 |
| 30 | g15283.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 325 | 353 | 10.014 |
| 33 | g15283.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 379 | 404 | 9.598 |
| 29 | g15283.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 410 | 438 | 9.951 |
| 17 | g15283.t1 | SMART | SM00355 | c2h2final6 | 158 | 182 | 0.2 |
| 13 | g15283.t1 | SMART | SM00355 | c2h2final6 | 209 | 231 | 52.0 |
| 18 | g15283.t1 | SMART | SM00355 | c2h2final6 | 237 | 259 | 0.047 |
| 10 | g15283.t1 | SMART | SM00355 | c2h2final6 | 268 | 291 | 0.33 |
| 9 | g15283.t1 | SMART | SM00355 | c2h2final6 | 298 | 320 | 23.0 |
| 12 | g15283.t1 | SMART | SM00355 | c2h2final6 | 325 | 348 | 0.1 |
| 15 | g15283.t1 | SMART | SM00355 | c2h2final6 | 352 | 374 | 260.0 |
| 11 | g15283.t1 | SMART | SM00355 | c2h2final6 | 379 | 404 | 0.0036 |
| 14 | g15283.t1 | SMART | SM00355 | c2h2final6 | 410 | 433 | 0.051 |
| 16 | g15283.t1 | SMART | SM00355 | c2h2final6 | 439 | 463 | 0.19 |
| 6 | g15283.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 210 | 261 | 3.35E-7 |
| 8 | g15283.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 300 | 343 | 1.19E-6 |
| 7 | g15283.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 367 | 419 | 2.5E-7 |
| 5 | g15283.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 411 | 463 | 1.31E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
