General information for g15284.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15284 is located on chr_4: 4828974..4830447 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15284 | g15284.t1 | TTS | g15284.t1 | 4827648 | 4827648 |
| chr_4 | g15284 | g15284.t1 | isoform | g15284.t1 | 4827687 | 4830447 |
| chr_4 | g15284 | g15284.t1 | exon | g15284.t1.exon1 | 4827687 | 4828016 |
| chr_4 | g15284 | g15284.t1 | cds | g15284.t1.CDS1 | 4827687 | 4828016 |
| chr_4 | g15284 | g15284.t1 | exon | g15284.t1.exon2 | 4828276 | 4828500 |
| chr_4 | g15284 | g15284.t1 | cds | g15284.t1.CDS2 | 4828276 | 4828500 |
| chr_4 | g15284 | g15284.t1 | exon | g15284.t1.exon3 | 4828810 | 4829376 |
| chr_4 | g15284 | g15284.t1 | cds | g15284.t1.CDS3 | 4828810 | 4829376 |
| chr_4 | g15284 | g15284.t1 | exon | g15284.t1.exon4 | 4829805 | 4830080 |
| chr_4 | g15284 | g15284.t1 | cds | g15284.t1.CDS4 | 4829805 | 4830080 |
| chr_4 | g15284 | g15284.t1 | exon | g15284.t1.exon5 | 4830313 | 4830447 |
| chr_4 | g15284 | g15284.t1 | cds | g15284.t1.CDS5 | 4830313 | 4830447 |
| chr_4 | g15284 | g15284.t1 | TSS | g15284.t1 | 4830457 | 4830457 |
Sequences
>g15284.t1 Gene=g15284 Length=1533
ATGGATCCATCATTAGATTTATATTGTTTAGCATCCAAATGTAGTTTTTGTTTTGAAGAA
TTCAAAGACGAAGACAAAGAAATAAAAATAGGCAAAAAAATTCATGCGAAATTCAATGAA
TTAATTCAGTGCAAACTAATATCAAAGACTTATTCATCAAAAATCTGTCTCGAATGTTAC
AATAAACTCACAACAGCTTATGACTTTAAACTTCAACTTGTAGCAAATCAGAAACTTTTG
GAAATAACTTTAGGAATTAAACCTGAAACTTCAATTGATTCATGTTATAACAATTTTAAA
GAGTTATTGACAAAATGTAGTTTTTGTTTTGAGGAATTTCAAAATGATACCGAAGGAATT
AAATTAGGCAAAAAAATTCATGCGAAATTTAATGAATTAATCCAGTGCAAGCTTATTTCA
AAATCGTTTTCATCAAAAATCTGTCTCGGATGTTACAATAAACTCACAAAAGCTTACGAT
TTCAAACTTCAACTTGTGGCAAATCAGAAGCTTTTGGAAATAACTTTAGGCATTGAGCTT
GAAGCTTCAAATATTTCTAATCTTAATGATTCCAAAGAATTCTTAACTGAATTTATTAAA
AAAGAAAAAGATGAAGAAGTTCCAAATTTTACACCAGAAAAATCATCAAACAAGCAAATT
TGTCCATATTGTGCTAAATATTATGCACCTGGAGCACTTGATACTCACATCAAAAGAGTT
CATACAGAAGATTACAAATATTTTTGTGATCACTGTCCATTAAAATTCAAAACAAGAAAA
AATATTTGTGGTCATATGGAAATTCACATGAGTCCTGAAAGCAGAAGAAGATTTCAATGT
GAATATTGTGAAAGAAGTTATTCTAAAAATAATGGATTGAGGCATCATATACAAATGACA
CATATTAAAGACGGTGATACTTTTGATTGTGCATGTGGAAAAAGTTTTAAGACAAAAGTT
CGATTGAATTATCATAAGCGTTTAACACATTCGAACAGAAATGAAAAATTTGGATGCCAA
GTTTGCAACAGAATTTATCCAAGGATTCAAAGCATAAAAAAACACATTCGTACTTATCAT
AAAGATAAGGCTCCATTTGGTGATTATGAACATCTCATTATAGTAGGAAATTCATTGAAT
ATGCAAATAACAGAGCAGAAAAATGAGAAAAAAACAGTAAAAAAAGAAAGAATGAGATTT
AAGTGTGATTTCTGCACCGAGACATTCTTAAGATACAGCCTCTTAAAAGAGCATAACGAT
AATTTTCATCCTGAAGAAAATACAGCAAAGTTTTGTTGTAATTTTTGTGGAAAAGAGTTG
AGTTGCAAAAATGCATTGAACAGACATGTTTATCGAAAACATTATGAACAAAATAAAGTC
GATTGTGTCGTTCCTGGTTGTACATATGCAAGTGGCCAAAAAGATTGTATGGTGAAACAT
ATTAGAAAAACTCATAAATATTTAGATGATGAACTTAAAAAAGAATTTGTAGACAGAGTT
CGTGAAATGATTAAAGAGTGTCAAAATTATTAA
>g15284.t1 Gene=g15284 Length=510
MDPSLDLYCLASKCSFCFEEFKDEDKEIKIGKKIHAKFNELIQCKLISKTYSSKICLECY
NKLTTAYDFKLQLVANQKLLEITLGIKPETSIDSCYNNFKELLTKCSFCFEEFQNDTEGI
KLGKKIHAKFNELIQCKLISKSFSSKICLGCYNKLTKAYDFKLQLVANQKLLEITLGIEL
EASNISNLNDSKEFLTEFIKKEKDEEVPNFTPEKSSNKQICPYCAKYYAPGALDTHIKRV
HTEDYKYFCDHCPLKFKTRKNICGHMEIHMSPESRRRFQCEYCERSYSKNNGLRHHIQMT
HIKDGDTFDCACGKSFKTKVRLNYHKRLTHSNRNEKFGCQVCNRIYPRIQSIKKHIRTYH
KDKAPFGDYEHLIIVGNSLNMQITEQKNEKKTVKKERMRFKCDFCTETFLRYSLLKEHND
NFHPEENTAKFCCNFCGKELSCKNALNRHVYRKHYEQNKVDCVVPGCTYASGQKDCMVKH
IRKTHKYLDDELKKEFVDRVREMIKECQNY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 25 | g15284.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 242 | 305 | 1.3E-9 |
| 24 | g15284.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 306 | 366 | 1.3E-8 |
| 23 | g15284.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 374 | 457 | 1.3E-8 |
| 1 | g15284.t1 | PANTHER | PTHR24409:SF320 | AZ2-RELATED | 78 | 364 | 1.6E-31 |
| 3 | g15284.t1 | PANTHER | PTHR24409 | ZINC FINGER PROTEIN 142 | 78 | 364 | 1.6E-31 |
| 2 | g15284.t1 | PANTHER | PTHR24409:SF320 | AZ2-RELATED | 312 | 486 | 1.6E-31 |
| 4 | g15284.t1 | PANTHER | PTHR24409 | ZINC FINGER PROTEIN 142 | 312 | 486 | 1.6E-31 |
| 22 | g15284.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 249 | 269 | - |
| 20 | g15284.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 280 | 301 | - |
| 19 | g15284.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 339 | 360 | - |
| 18 | g15284.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 402 | 423 | - |
| 21 | g15284.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 432 | 454 | - |
| 28 | g15284.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 247 | 274 | 9.099 |
| 31 | g15284.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 278 | 306 | 10.512 |
| 27 | g15284.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 308 | 335 | 10.18 |
| 29 | g15284.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 337 | 365 | 10.596 |
| 26 | g15284.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 400 | 428 | 10.367 |
| 30 | g15284.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 431 | 459 | 9.66 |
| 9 | g15284.t1 | SMART | SM00868 | zf_AD_2 | 13 | 83 | 0.0017 |
| 8 | g15284.t1 | SMART | SM00868 | zf_AD_2 | 105 | 175 | 7.8E-4 |
| 11 | g15284.t1 | SMART | SM00355 | c2h2final6 | 219 | 241 | 30.0 |
| 17 | g15284.t1 | SMART | SM00355 | c2h2final6 | 247 | 269 | 0.17 |
| 14 | g15284.t1 | SMART | SM00355 | c2h2final6 | 278 | 301 | 0.032 |
| 15 | g15284.t1 | SMART | SM00355 | c2h2final6 | 308 | 330 | 21.0 |
| 12 | g15284.t1 | SMART | SM00355 | c2h2final6 | 337 | 360 | 0.25 |
| 13 | g15284.t1 | SMART | SM00355 | c2h2final6 | 400 | 423 | 1.1 |
| 16 | g15284.t1 | SMART | SM00355 | c2h2final6 | 431 | 454 | 0.2 |
| 10 | g15284.t1 | SMART | SM00355 | c2h2final6 | 460 | 485 | 3.3 |
| 5 | g15284.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 217 | 270 | 1.27E-6 |
| 7 | g15284.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 275 | 325 | 8.1E-5 |
| 6 | g15284.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 311 | 358 | 1.64E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
