General information for g15284.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15284 is located on chr_4: 4828974..4830447 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15284 | g15284.t2 | TTS | g15284.t2 | 4828301 | 4828301 |
| chr_4 | g15284 | g15284.t2 | isoform | g15284.t2 | 4828974 | 4830447 |
| chr_4 | g15284 | g15284.t2 | exon | g15284.t2.exon1 | 4828974 | 4829376 |
| chr_4 | g15284 | g15284.t2 | cds | g15284.t2.CDS1 | 4828975 | 4829376 |
| chr_4 | g15284 | g15284.t2 | exon | g15284.t2.exon2 | 4829805 | 4830080 |
| chr_4 | g15284 | g15284.t2 | cds | g15284.t2.CDS2 | 4829805 | 4830080 |
| chr_4 | g15284 | g15284.t2 | exon | g15284.t2.exon3 | 4830313 | 4830447 |
| chr_4 | g15284 | g15284.t2 | cds | g15284.t2.CDS3 | 4830313 | 4830447 |
| chr_4 | g15284 | g15284.t2 | TSS | g15284.t2 | 4830457 | 4830457 |
Sequences
>g15284.t2 Gene=g15284 Length=814
ATGGATCCATCATTAGATTTATATTGTTTAGCATCCAAATGTAGTTTTTGTTTTGAAGAA
TTCAAAGACGAAGACAAAGAAATAAAAATAGGCAAAAAAATTCATGCGAAATTCAATGAA
TTAATTCAGTGCAAACTAATATCAAAGACTTATTCATCAAAAATCTGTCTCGAATGTTAC
AATAAACTCACAACAGCTTATGACTTTAAACTTCAACTTGTAGCAAATCAGAAACTTTTG
GAAATAACTTTAGGAATTAAACCTGAAACTTCAATTGATTCATGTTATAACAATTTTAAA
GAGTTATTGACAAAATGTAGTTTTTGTTTTGAGGAATTTCAAAATGATACCGAAGGAATT
AAATTAGGCAAAAAAATTCATGCGAAATTTAATGAATTAATCCAGTGCAAGCTTATTTCA
AAATCGTTTTCATCAAAAATCTGTCTCGGATGTTACAATAAACTCACAAAAGCTTACGAT
TTCAAACTTCAACTTGTGGCAAATCAGAAGCTTTTGGAAATAACTTTAGGCATTGAGCTT
GAAGCTTCAAATATTTCTAATCTTAATGATTCCAAAGAATTCTTAACTGAATTTATTAAA
AAAGAAAAAGATGAAGAAGTTCCAAATTTTACACCAGAAAAATCATCAAACAAGCAAATT
TGTCCATATTGTGCTAAATATTATGCACCTGGAGCACTTGATACTCACATCAAAAGAGTT
CATACAGAAGATTACAAATATTTTTGTGATCACTGTCCATTAAAATTCAAAACAAGAAAA
AATATTTGTGGTCATATGGAAATTCACATGAGTC
>g15284.t2 Gene=g15284 Length=271
MDPSLDLYCLASKCSFCFEEFKDEDKEIKIGKKIHAKFNELIQCKLISKTYSSKICLECY
NKLTTAYDFKLQLVANQKLLEITLGIKPETSIDSCYNNFKELLTKCSFCFEEFQNDTEGI
KLGKKIHAKFNELIQCKLISKSFSSKICLGCYNKLTKAYDFKLQLVANQKLLEITLGIEL
EASNISNLNDSKEFLTEFIKKEKDEEVPNFTPEKSSNKQICPYCAKYYAPGALDTHIKRV
HTEDYKYFCDHCPLKFKTRKNICGHMEIHMS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15284.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 188 | 271 | 1.3E-8 |
| 6 | g15284.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 249 | 269 | - |
| 8 | g15284.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 247 | 271 | 9.224 |
| 3 | g15284.t2 | SMART | SM00868 | zf_AD_2 | 13 | 83 | 0.0017 |
| 2 | g15284.t2 | SMART | SM00868 | zf_AD_2 | 105 | 175 | 7.8E-4 |
| 5 | g15284.t2 | SMART | SM00355 | c2h2final6 | 219 | 241 | 30.0 |
| 4 | g15284.t2 | SMART | SM00355 | c2h2final6 | 247 | 269 | 0.17 |
| 1 | g15284.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 217 | 270 | 6.11E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed