General information for g15285.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 19.
Parent gene
- The parent gene g15285 is located on chr_4: 4830613..4832258 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15285 | g15285.t1 | TTS | g15285.t1 | 4830572 | 4830572 |
| chr_4 | g15285 | g15285.t1 | isoform | g15285.t1 | 4830613 | 4832258 |
| chr_4 | g15285 | g15285.t1 | exon | g15285.t1.exon1 | 4830613 | 4830846 |
| chr_4 | g15285 | g15285.t1 | cds | g15285.t1.CDS1 | 4830613 | 4830846 |
| chr_4 | g15285 | g15285.t1 | exon | g15285.t1.exon2 | 4830915 | 4831010 |
| chr_4 | g15285 | g15285.t1 | cds | g15285.t1.CDS2 | 4830915 | 4831010 |
| chr_4 | g15285 | g15285.t1 | exon | g15285.t1.exon3 | 4831066 | 4831257 |
| chr_4 | g15285 | g15285.t1 | cds | g15285.t1.CDS3 | 4831066 | 4831257 |
| chr_4 | g15285 | g15285.t1 | exon | g15285.t1.exon4 | 4831466 | 4832041 |
| chr_4 | g15285 | g15285.t1 | cds | g15285.t1.CDS4 | 4831466 | 4832041 |
| chr_4 | g15285 | g15285.t1 | exon | g15285.t1.exon5 | 4832124 | 4832258 |
| chr_4 | g15285 | g15285.t1 | cds | g15285.t1.CDS5 | 4832124 | 4832258 |
| chr_4 | g15285 | g15285.t1 | TSS | g15285.t1 | 4832306 | 4832306 |
Sequences
>g15285.t1 Gene=g15285 Length=1233
ATGTCAACTTCAATGGATTCAATTTATTTATCAAGTAAATGCAGTTTTTGCTTTGAAAGC
TTCACAGAAGATGCTGAAAGAATTAAAATTGATCGTGAAATTCATGCGAAATTCAATGAA
TTGGTTAAAAGAAAGCTTCTTTCAAAGAAATTTGCACCAAATATCTGCATTGAATGTTAC
AACAAACTCACATTGTCTTATGACTTTAAAATTCAACTTGAAGCAAATCAAAAACTTCTT
GAAATGTCACTCAATATCAGCAATGAAACAACAACCACAGAAAATTATTCAACTGTAAAA
TTCATAAAAGAAGAACCACAAGAATTTATGATCACAAAATTCTTTGAAGAAATTCCACCA
AAGCCAAAAAAAGATCCAAACCAGAAGAAAATTTGTCCATATTGTGCTAAACATTATGCA
CCTGGAGCATTAGAAAATCATATTAAGAAATCTCATACAGAAGATTACAAATATTTTTGT
GATCACTGTCCATTGAAATTCAAAACTAGAAAAGATATTTGTGGTCATATGGAAATTCAC
ATGAGTCCTGAAAGTAGAAGAAGATTTCAATGTGAATATTGTGAAAGAAATTATTCCAAA
AAGACATCATTGCTTCATCATATTCAAATGTGGCATACAGAAAATGGTGAAATATTTGAA
TGTGAATGTGGTGCAAGTTTTAAGACTCAAAAGAGACTTAGATATCATAAGAGAAATACT
CATGAACAAGGCAGCTATGAATGTCACGAATGCAATAAATTTTATAAATCAAAACATTTA
TTAAAAACTCATATTGCAATGATTCATAGAGATAAAATTCCATGTACAATTTGTGGAAAA
GAAGTTGCAGAAGGACATTTGATGAAAGATCATATGAAGAGACATTTGAGTGCTAATCAT
ATTTGCAAAACATGTGGAGAGAAATTTTCAACCAGAGAAGGTCTTTTAAAACATGAACGT
GAAATTCACTTTTTAGTTAAAGGTTTGCACTTTTGTAAGGATTGTGGAAAAGAACTAAGT
TCAGCAAGAGCACTTAAAAGACACATCCTTCGATTGCATACAGAAACTGAAAAAGTTAAA
TGTTGTGTTGAAGAATGTAAATACGAAACGGGTCAGAAAGATGATTTGGTCAAGCATTTG
AAAACTCAACATAAAGAACTAAGCGAAGAAAAACTTCAAAAGAAAATTGTGAGAATTAAG
TCAATGAGAAATTGGAATATAAAATTAAAATAA
>g15285.t1 Gene=g15285 Length=410
MSTSMDSIYLSSKCSFCFESFTEDAERIKIDREIHAKFNELVKRKLLSKKFAPNICIECY
NKLTLSYDFKIQLEANQKLLEMSLNISNETTTTENYSTVKFIKEEPQEFMITKFFEEIPP
KPKKDPNQKKICPYCAKHYAPGALENHIKKSHTEDYKYFCDHCPLKFKTRKDICGHMEIH
MSPESRRRFQCEYCERNYSKKTSLLHHIQMWHTENGEIFECECGASFKTQKRLRYHKRNT
HEQGSYECHECNKFYKSKHLLKTHIAMIHRDKIPCTICGKEVAEGHLMKDHMKRHLSANH
ICKTCGEKFSTREGLLKHEREIHFLVKGLHFCKDCGKELSSARALKRHILRLHTETEKVK
CCVEECKYETGQKDDLVKHLKTQHKELSEEKLQKKIVRIKSMRNWNIKLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 33 | g15285.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 153 | 216 | 1.2E-9 |
| 30 | g15285.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 217 | 272 | 4.4E-8 |
| 32 | g15285.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 274 | 323 | 8.6E-9 |
| 31 | g15285.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 329 | 384 | 4.0E-8 |
| 5 | g15285.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 89 | 295 | 9.6E-40 |
| 8 | g15285.t1 | PANTHER | PTHR24390:SF161 | KRUEPPEL HOMOLOG 1 | 89 | 295 | 9.6E-40 |
| 6 | g15285.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 218 | 321 | 9.6E-40 |
| 9 | g15285.t1 | PANTHER | PTHR24390:SF161 | KRUEPPEL HOMOLOG 1 | 218 | 321 | 9.6E-40 |
| 7 | g15285.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 246 | 387 | 9.6E-40 |
| 10 | g15285.t1 | PANTHER | PTHR24390:SF161 | KRUEPPEL HOMOLOG 1 | 246 | 387 | 9.6E-40 |
| 4 | g15285.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 189 | 212 | 0.0049 |
| 2 | g15285.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 246 | 269 | 4.8E-4 |
| 1 | g15285.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 300 | 323 | 0.0024 |
| 3 | g15285.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 331 | 353 | 0.0021 |
| 26 | g15285.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 160 | 180 | - |
| 29 | g15285.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 191 | 212 | - |
| 25 | g15285.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 248 | 269 | - |
| 28 | g15285.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 302 | 323 | - |
| 27 | g15285.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 332 | 353 | - |
| 36 | g15285.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 158 | 185 | 8.933 |
| 39 | g15285.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 189 | 217 | 10.471 |
| 38 | g15285.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 219 | 241 | 8.6 |
| 37 | g15285.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 246 | 274 | 11.157 |
| 35 | g15285.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 300 | 328 | 11.032 |
| 34 | g15285.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 330 | 358 | 10.201 |
| 15 | g15285.t1 | SMART | SM00868 | zf_AD_2 | 13 | 83 | 0.005 |
| 20 | g15285.t1 | SMART | SM00355 | c2h2final6 | 130 | 152 | 25.0 |
| 19 | g15285.t1 | SMART | SM00355 | c2h2final6 | 158 | 180 | 0.13 |
| 24 | g15285.t1 | SMART | SM00355 | c2h2final6 | 189 | 212 | 8.0 |
| 21 | g15285.t1 | SMART | SM00355 | c2h2final6 | 219 | 241 | 11.0 |
| 18 | g15285.t1 | SMART | SM00355 | c2h2final6 | 246 | 269 | 0.068 |
| 17 | g15285.t1 | SMART | SM00355 | c2h2final6 | 273 | 295 | 1.1 |
| 23 | g15285.t1 | SMART | SM00355 | c2h2final6 | 300 | 323 | 0.0035 |
| 22 | g15285.t1 | SMART | SM00355 | c2h2final6 | 330 | 353 | 0.025 |
| 16 | g15285.t1 | SMART | SM00355 | c2h2final6 | 359 | 384 | 1.3 |
| 13 | g15285.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 129 | 181 | 4.78E-6 |
| 11 | g15285.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 186 | 236 | 3.33E-5 |
| 14 | g15285.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 226 | 280 | 4.91E-6 |
| 12 | g15285.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 274 | 320 | 9.33E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
