Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Zinc finger protein 154.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15286 g15286.t1 TTS g15286.t1 4832605 4832605
chr_4 g15286 g15286.t1 isoform g15286.t1 4832633 4834364
chr_4 g15286 g15286.t1 exon g15286.t1.exon1 4832633 4832947
chr_4 g15286 g15286.t1 cds g15286.t1.CDS1 4832633 4832947
chr_4 g15286 g15286.t1 exon g15286.t1.exon2 4833111 4833302
chr_4 g15286 g15286.t1 cds g15286.t1.CDS2 4833111 4833302
chr_4 g15286 g15286.t1 exon g15286.t1.exon3 4833602 4834171
chr_4 g15286 g15286.t1 cds g15286.t1.CDS3 4833602 4834171
chr_4 g15286 g15286.t1 exon g15286.t1.exon4 4834230 4834364
chr_4 g15286 g15286.t1 cds g15286.t1.CDS4 4834230 4834364
chr_4 g15286 g15286.t1 TSS g15286.t1 NA NA

Sequences

>g15286.t1 Gene=g15286 Length=1212
ATGAATCAAGAAATAAATTTAGAAAATTTATCAGGAAAATGCAGTTTTTGTTTTGAAGAA
TTTAAAGATTATACAGAAAATGTGAAAATTACCAAAGAAATAGAAACAAAATTTAATGAG
TTAGTTCAATGTCAACTCATTTCCATAAGTTTTTCATCATCAATTTGCCTTGAATGTTTC
AACAAATTCACAATTGCTTATGACTTTAAAATTCAACTTGAAGCAAATCAAAAACTTCTT
GAAAAATTTCTCAATAATGAAACAAAAGATCAATTTGAAATTTCTAATGAAGAAACTGAA
TTCATTGTTGAATATCTCGAAGAAGTTGAAGAAGATCAACTTGAAATTATCCCAAAAAGA
ACTTCAAAGTCACAAGAAAAGAAAATTTGTCCAATCTGTGCAAATTATTATTCTGCAAAT
GCACTTGATGATCACATAAATCGAGTTCATTCTGATAATTATCAATTTTACTGTGATCTT
TGTCCAAATAAATTCAAGACTAAAAGAGACATCACAAGTCATGTTCAGACACATTTAAAT
GTTGAAAGTCGAAGAAGATTTCAATGTGAATTTTGTGAGAAAATTTATATGAAAAATTCA
ACTTTAGTTCATCATATAAAAATGAGACATACAGAAGATGGTGAAAAATTTGAATGTGAA
TGTGGTGCGAGTTTTAAGACTCAATTGAGACTGAATTATCATAAAAAAATTACACACGAA
AAAGGCAACTACGAATGCCTCGAATGCAACAGAATTTATCCATCAATGCACAATTTGAAA
ATTCATATTTCACATTTTCATAGAGAAAAGGAACCTTGTGTATTTTGTGGTAAACTTGTT
GCTCCTGGATCATTTATGAAAAGGCATATGAAAATTCATGAAGAAGCTTCACATAAGTGT
AAAATTTGCGAAAAATCTTTCACAGTTCGTGAAACACTTCTTGAGCATTGTCGAGCAGTT
CATGGACTTGGTGGATCACATTTTTGTGAAATGTGCGGCAAAAAGATGAGCAGTAAAAAA
GTTCTAAAAAGGCACATTGAAAGAGTTCATGAAGCTTCTGAAAAAGTAAAATGTTTAATT
AATGAATGTCTTTATATGGCTAGTAGAAAGGATAATATGATAAATCACATTAAAAATCAT
AAAGAACTTGATGAGGAAACTAAAAATGCTCATATTTTGACTGTAAGAGGAATGAAAAAT
ATGTCGTGGTAG

>g15286.t1 Gene=g15286 Length=403
MNQEINLENLSGKCSFCFEEFKDYTENVKITKEIETKFNELVQCQLISISFSSSICLECF
NKFTIAYDFKIQLEANQKLLEKFLNNETKDQFEISNEETEFIVEYLEEVEEDQLEIIPKR
TSKSQEKKICPICANYYSANALDDHINRVHSDNYQFYCDLCPNKFKTKRDITSHVQTHLN
VESRRRFQCEFCEKIYMKNSTLVHHIKMRHTEDGEKFECECGASFKTQLRLNYHKKITHE
KGNYECLECNRIYPSMHNLKIHISHFHREKEPCVFCGKLVAPGSFMKRHMKIHEEASHKC
KICEKSFTVRETLLEHCRAVHGLGGSHFCEMCGKKMSSKKVLKRHIERVHEASEKVKCLI
NECLYMASRKDNMINHIKNHKELDEETKNAHILTVRGMKNMSW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
26 g15286.t1 Coils Coil Coil 342 362 -
24 g15286.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 104 183 6.9E-9
25 g15286.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 185 215 4.9E-5
21 g15286.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 216 271 8.1E-8
23 g15286.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 272 321 2.3E-9
22 g15286.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 326 380 3.9E-8
2 g15286.t1 PANTHER PTHR24406 TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED 22 321 2.4E-46
1 g15286.t1 PANTHER PTHR24406 TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED 220 382 2.4E-46
17 g15286.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 158 178 -
16 g15286.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 189 210 -
19 g15286.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 246 267 -
20 g15286.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 300 321 -
18 g15286.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 329 350 -
29 g15286.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 156 183 9.369
31 g15286.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 187 215 10.658
30 g15286.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 244 272 10.845
27 g15286.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 298 321 10.492
28 g15286.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 327 355 10.076
6 g15286.t1 SMART SM00868 zf_AD_2 13 83 0.0038
12 g15286.t1 SMART SM00355 c2h2final6 128 150 79.0
7 g15286.t1 SMART SM00355 c2h2final6 156 178 0.064
8 g15286.t1 SMART SM00355 c2h2final6 187 210 0.35
13 g15286.t1 SMART SM00355 c2h2final6 217 239 17.0
11 g15286.t1 SMART SM00355 c2h2final6 244 267 0.69
10 g15286.t1 SMART SM00355 c2h2final6 271 293 44.0
9 g15286.t1 SMART SM00355 c2h2final6 298 321 0.01
14 g15286.t1 SMART SM00355 c2h2final6 327 350 0.039
15 g15286.t1 SMART SM00355 c2h2final6 356 380 6.3
3 g15286.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 150 205 1.03E-7
5 g15286.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 220 263 2.46E-6
4 g15286.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 284 334 3.46E-7

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0008270 zinc ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values