Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 6a2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15288 g15288.t3 isoform g15288.t3 4837691 4839677
chr_4 g15288 g15288.t3 exon g15288.t3.exon1 4837691 4838908
chr_4 g15288 g15288.t3 cds g15288.t3.CDS1 4838253 4838908
chr_4 g15288 g15288.t3 exon g15288.t3.exon2 4839045 4839461
chr_4 g15288 g15288.t3 cds g15288.t3.CDS2 4839045 4839461
chr_4 g15288 g15288.t3 exon g15288.t3.exon3 4839521 4839677
chr_4 g15288 g15288.t3 cds g15288.t3.CDS3 4839521 4839677
chr_4 g15288 g15288.t3 TTS g15288.t3 4839920 4839920
chr_4 g15288 g15288.t3 TSS g15288.t3 NA NA

Sequences

>g15288.t3 Gene=g15288 Length=1792
ATGAAATTGAAAACACAAACCTTTGAAATTCGCAGCAGTCCAGGTATTTATATCACCAGA
AGATTATTTTAATGAAAAAATGTGTACAATTTTGTTAAAAAATTTATTCAAAATTTGATT
AAATTTAATTAAAAAATATTTAAATAAATAAATTAATCGATATGACCTTGAGAAAGTAAA
TGTGTAGGTTGTCATATATTTACACAATTAACTCAAATTCAGATTCTCTCTCGAGCACGC
ATACAAATGCTATAAAATTAATGTTTTGATGTTTATATTCACTTGATAGAATTTTTCTTC
TCTCAGTTTATAAAATTCATTAACACGGACAATATCGCAAAAAATGTTTTTCTATATAAT
TGCATTTTTAATTTTCTTAATTTATTTATATTTTAAATGATTATATTCTTATTGGGATCT
CCGCGGTTTTCCGTACGTTCCTGGAAAGTTTCCTTTAGGAAGTGTTGGAACAGTAGGATT
TAAAGAGCATTCTTGTGAATTCTTTAAGCGACAATATGACAAATTTAAAGATAAAGCTCC
TGCTTTTGGTGTATTTTTTTTTATGCAGACATCACTTGCAATTACTGACCCTGAATTGAT
TAAAGAAGTTTTTGTAAGAAATTTTGAAAGTTTTCATGAGCGTGGATTTTTTATTAATGA
ACAAGCTGATCCATTATCAGCTCATTTGTTTGCTCTTGGTGGTCAACAATGGAAAGAGTT
GAGGGCAAAATTGAGTCCCACATTTACATCAGGACGAATGAAAATGATGTTTCCATTGGT
AGTTAAAGCAGCTGATCGAATGGTTGAATATTTAATGCCATATGCAGACAACATTGAAGA
ATTAGAAGTTAAAGAAGTTTATGCAGAATTCACTACTGAAGTTATTTCTAGTGTTGCTTT
TGGATTAGACATTCCTTGTCTAGGAAATCCAGATAGTGAATTTAGAAAAGTTTCAAAAAC
ACTCTTTGAACCGACAAAATTAGAAAATATAAAAATAATGTTCATTTTTGCTTTTCCTGA
ACTTGCAAAAGGGTTAAATATGAGGTTTATTCCAAAGAAATCAGCAGATTTTTTCATGGG
AGTTATTCGAGATACGCTAGAATATCGTGAAAAAAATAATGTTGAGAGAAATGACTTTTT
GCAACTGTTGATAAACATAAGAGATACAGAAGGAATGACTTTCAATGAAATTGCTGCAAA
CTCTTTTATTTTCTTTAACTCAAGTGTGATGACATTTAGTACTTATGAACTTGCATTAAA
TCAAGACATTCAAGAGAGACTTCGTACTGAAATTAATGAAGTTATTGCAAAAAACAATGG
AGAAATCACTTATGAATCTATCATGGAAATGAAATATCTTGACATGGTTTTCAATGAAAC
ACTTCGAAAATATCCAATTGTTGATATTCAAATTAGAAAGTCAGTGAAAGATTTTGCAAT
TCCAAATACAAATTTAGTGATTCCTGCAAATACTGGGATCATGATTCCAGTTTATGCAAT
TCATCATGATGAGAAATACTATGAAAACCCAGATAAATTTGATCCTGAAAGATTCACTGA
AGAAATTGTAAGAAAACAATTGCCGTACACATTTATTCCATTTAGTGAAGGACCAAGGCA
ATGCATAGGATTAAGATTTGGAACAATGCAAGCAAAAATAGGAATTGTAAAACTTGTAAA
AAACTTCAAAATATTACCATGCAGTAAAACTTTGATTCCGATGAAATACAATCCACCTTC
TGGCTTCATGAGTCCTCTTGGCGGAATGTGGCTTAAATTTGAAAAATTGTGA

>g15288.t3 Gene=g15288 Length=409
MQTSLAITDPELIKEVFVRNFESFHERGFFINEQADPLSAHLFALGGQQWKELRAKLSPT
FTSGRMKMMFPLVVKAADRMVEYLMPYADNIEELEVKEVYAEFTTEVISSVAFGLDIPCL
GNPDSEFRKVSKTLFEPTKLENIKIMFIFAFPELAKGLNMRFIPKKSADFFMGVIRDTLE
YREKNNVERNDFLQLLINIRDTEGMTFNEIAANSFIFFNSSVMTFSTYELALNQDIQERL
RTEINEVIAKNNGEITYESIMEMKYLDMVFNETLRKYPIVDIQIRKSVKDFAIPNTNLVI
PANTGIMIPVYAIHHDEKYYENPDKFDPERFTEEIVRKQLPYTFIPFSEGPRQCIGLRFG
TMQAKIGIVKLVKNFKILPCSKTLIPMKYNPPSGFMSPLGGMWLKFEKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g15288.t3 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 409 1.1E-114
2 g15288.t3 PANTHER PTHR24292 CYTOCHROME P450 5 409 1.7E-157
3 g15288.t3 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 5 409 1.7E-157
4 g15288.t3 PRINTS PR00463 E-class P450 group I signature 12 33 2.4E-20
7 g15288.t3 PRINTS PR00463 E-class P450 group I signature 223 249 2.4E-20
13 g15288.t3 PRINTS PR00385 P450 superfamily signature 232 245 2.1E-7
6 g15288.t3 PRINTS PR00463 E-class P450 group I signature 267 285 2.4E-20
10 g15288.t3 PRINTS PR00385 P450 superfamily signature 268 279 2.1E-7
8 g15288.t3 PRINTS PR00463 E-class P450 group I signature 309 333 2.4E-20
5 g15288.t3 PRINTS PR00463 E-class P450 group I signature 344 354 2.4E-20
12 g15288.t3 PRINTS PR00385 P450 superfamily signature 345 354 2.1E-7
9 g15288.t3 PRINTS PR00463 E-class P450 group I signature 354 377 2.4E-20
11 g15288.t3 PRINTS PR00385 P450 superfamily signature 354 365 2.1E-7
1 g15288.t3 Pfam PF00067 Cytochrome P450 2 398 1.5E-84
15 g15288.t3 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 347 356 -
14 g15288.t3 SUPERFAMILY SSF48264 Cytochrome P450 3 407 5.76E-102

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values