Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 6a2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15288 g15288.t4 isoform g15288.t4 4837691 4839677
chr_4 g15288 g15288.t4 exon g15288.t4.exon1 4837691 4838908
chr_4 g15288 g15288.t4 cds g15288.t4.CDS1 4838253 4838908
chr_4 g15288 g15288.t4 exon g15288.t4.exon2 4839027 4839461
chr_4 g15288 g15288.t4 cds g15288.t4.CDS2 4839027 4839461
chr_4 g15288 g15288.t4 exon g15288.t4.exon3 4839521 4839677
chr_4 g15288 g15288.t4 cds g15288.t4.CDS3 4839521 4839677
chr_4 g15288 g15288.t4 TTS g15288.t4 4839920 4839920
chr_4 g15288 g15288.t4 TSS g15288.t4 NA NA

Sequences

>g15288.t4 Gene=g15288 Length=1810
ATGAAATTGAAAACACAAACCTTTGAAATTCGCAGCAGTCCAGGTATTTATATCACCAGA
AGATTATTTTAATGAAAAAATGTGTACAATTTTGTTAAAAAATTTATTCAAAATTTGATT
AAATTTAATTAAAAAATATTTAAATAAATAAATTAATCGATATGACCTTGAGAAAGTAAA
TGTGTAGGTTGTCATATATTTACACAATTAACTCAAATTCAGATTCTCTCTCGAGCACGC
ATACAAATGCTATAAAATTAATGTTTTGATGTTTATATTCACTTGATAGAATTTTTCTTC
TCTCAGTTTATAAAATTCATTAACACGGACAATATCGCAAAAAATGTTTTTCTATATAAT
TGCATTTTTAATTTTCTTAATTTATTTATATTTTAAATGATTATATTCTTATTGGGATCT
CCGCGGTTTTCCGTACGTTCCTGGAAAGTTTCCTTTAGGAAGTGTTGGAACAGTAGGATT
TAAAGAGCATTCTTGTGAATTCTTTAAGCGACAATATGACAAATTTAAAGATAAAGCTCC
TGCTTTTGGTGTATTTTTTTTTATGCAGACATCACTTGCAATTACTGACCCTGAATTGAT
TAAAGAAGTTTTTGTAAGAAATTTTGAAAGTTTTCATGAGCGTGGATTTTTTATTAATGA
ACAAGCTGATCCATTATCAGCTCATTTGTTTGCTCTTGGTGGTCAACAATGGAAAGAGTT
GAGGGCAAAATTGAGTCCCACATTTACATCAGGACGAATGAAAATGATGTTTCCATTGGT
AGTTAAAGCAGCTGATCGAATGGTTGAATATTTAATGCCATATGCAGACAACATTGAAGA
ATTAGAAGTTAAAGAAGTTTATGCAGAATTCACTACTGAAGTTATTTCTAGTGTTGCTTT
TGGATTAGACATTCCTTGTCTAGGAAATCCAGATAGTGAATTTAGAAAAGTTTCAAAAAC
ACTCTTTGAACCGACAAAATTAGAAAATATAAAAATAATGTTCATTTTTGCTTTTCCTGA
ACTTGCAAAAGGGTTAAATATGAGGTTTATTCCAAAGAAATCAGCAGATTTTTTCATGGG
AGTTATTCGAGATACGCTAGAATATCGTGAAAAAAATAATGTTGAGAGAAATGACTTTTT
GCAACTGTTGATAAACATAAGAGATACAGAAGGAATGACTTTCAATGAAATTGCTGCAAA
CTCTTTTATTTTCTTTAATGCTGGTTTCGAGACAAGCTCAAGTGTGATGACATTTAGTAC
TTATGAACTTGCATTAAATCAAGACATTCAAGAGAGACTTCGTACTGAAATTAATGAAGT
TATTGCAAAAAACAATGGAGAAATCACTTATGAATCTATCATGGAAATGAAATATCTTGA
CATGGTTTTCAATGAAACACTTCGAAAATATCCAATTGTTGATATTCAAATTAGAAAGTC
AGTGAAAGATTTTGCAATTCCAAATACAAATTTAGTGATTCCTGCAAATACTGGGATCAT
GATTCCAGTTTATGCAATTCATCATGATGAGAAATACTATGAAAACCCAGATAAATTTGA
TCCTGAAAGATTCACTGAAGAAATTGTAAGAAAACAATTGCCGTACACATTTATTCCATT
TAGTGAAGGACCAAGGCAATGCATAGGATTAAGATTTGGAACAATGCAAGCAAAAATAGG
AATTGTAAAACTTGTAAAAAACTTCAAAATATTACCATGCAGTAAAACTTTGATTCCGAT
GAAATACAATCCACCTTCTGGCTTCATGAGTCCTCTTGGCGGAATGTGGCTTAAATTTGA
AAAATTGTGA

>g15288.t4 Gene=g15288 Length=415
MQTSLAITDPELIKEVFVRNFESFHERGFFINEQADPLSAHLFALGGQQWKELRAKLSPT
FTSGRMKMMFPLVVKAADRMVEYLMPYADNIEELEVKEVYAEFTTEVISSVAFGLDIPCL
GNPDSEFRKVSKTLFEPTKLENIKIMFIFAFPELAKGLNMRFIPKKSADFFMGVIRDTLE
YREKNNVERNDFLQLLINIRDTEGMTFNEIAANSFIFFNAGFETSSSVMTFSTYELALNQ
DIQERLRTEINEVIAKNNGEITYESIMEMKYLDMVFNETLRKYPIVDIQIRKSVKDFAIP
NTNLVIPANTGIMIPVYAIHHDEKYYENPDKFDPERFTEEIVRKQLPYTFIPFSEGPRQC
IGLRFGTMQAKIGIVKLVKNFKILPCSKTLIPMKYNPPSGFMSPLGGMWLKFEKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g15288.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 415 3.3E-123
2 g15288.t4 PANTHER PTHR24292 CYTOCHROME P450 5 415 1.8E-166
3 g15288.t4 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 5 415 1.8E-166
4 g15288.t4 PRINTS PR00463 E-class P450 group I signature 12 33 1.3E-23
10 g15288.t4 PRINTS PR00463 E-class P450 group I signature 209 226 1.3E-23
14 g15288.t4 PRINTS PR00385 P450 superfamily signature 220 237 2.1E-10
7 g15288.t4 PRINTS PR00463 E-class P450 group I signature 229 255 1.3E-23
6 g15288.t4 PRINTS PR00463 E-class P450 group I signature 273 291 1.3E-23
12 g15288.t4 PRINTS PR00385 P450 superfamily signature 274 285 2.1E-10
8 g15288.t4 PRINTS PR00463 E-class P450 group I signature 315 339 1.3E-23
9 g15288.t4 PRINTS PR00463 E-class P450 group I signature 350 360 1.3E-23
11 g15288.t4 PRINTS PR00385 P450 superfamily signature 351 360 2.1E-10
5 g15288.t4 PRINTS PR00463 E-class P450 group I signature 360 383 1.3E-23
13 g15288.t4 PRINTS PR00385 P450 superfamily signature 360 371 2.1E-10
1 g15288.t4 Pfam PF00067 Cytochrome P450 2 404 5.5E-93
16 g15288.t4 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 353 362 -
15 g15288.t4 SUPERFAMILY SSF48264 Cytochrome P450 3 413 1.96E-109

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values