Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 6a13.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15291 g15291.t1 isoform g15291.t1 4844259 4846106
chr_4 g15291 g15291.t1 exon g15291.t1.exon1 4844259 4845141
chr_4 g15291 g15291.t1 cds g15291.t1.CDS1 4844259 4845141
chr_4 g15291 g15291.t1 exon g15291.t1.exon2 4845469 4845898
chr_4 g15291 g15291.t1 cds g15291.t1.CDS2 4845469 4845898
chr_4 g15291 g15291.t1 exon g15291.t1.exon3 4845950 4846106
chr_4 g15291 g15291.t1 cds g15291.t1.CDS3 4845950 4846106
chr_4 g15291 g15291.t1 TTS g15291.t1 4846719 4846719
chr_4 g15291 g15291.t1 TSS g15291.t1 NA NA

Sequences

>g15291.t1 Gene=g15291 Length=1470
ATGTTGCTTCAAATAATTTTTATTTTATTCTCAATTTATCTTTGGTTTCAATATAAATTT
TTATATTGGAAAAAATTAGGATTTTCTCATGTTCCTGGAAAAATTCCAGTTGGCAGTGGC
TCAGATGTTGGCTCAAAAGAACATTTGTGTGATTTTTTAAAACGCGAATATGATAAATTT
AAAAATATCAGCCCTGCATTTGGAGTTTATTTTATGACAAAGCCAGTTTTAGTGCCAACA
GATCCCGAATTAATACGAGACATTTTTGTGAGAAATTTTGAAACTTTTCATGAACGTGGA
CTGAGTTTTTGTGAAAAAGCTGATCCATTGTCACAACATTTATTTTTTAAAAATGGTCAA
GAATGGAAAGATTTGAGAGGAAAATTGACACAAGTTTTCACATCAGGAAGAATGAAAATG
ATGTTTCCCAATGTTTTAGAGAAAAGTGACAACATGATAAATTATCTGAAATCTTGTGCT
GAAATAAATGACGCATTAGAAATGAAAGAAGTTTTCAGTTCATTTACAACTGAAGTTATC
GCTGATGTTGCATTTGGGTTTCTTACTGAATGTATTGACAATCCTAACAATGAATTCAGA
AGAATGGGAAATGCTGTTTTTGAGCCAACAGCTATGGAACATATTAAACTTTTCTTCATA
ATGTCCTATGGAAGACTTGCATCATTTTTAGGAATTGGACTTAATAGAAAAGCAACAATT
AAATTTTTCATGGGAATTGTTCAAGATGTTTTAAAATTTCGTGAAGATAATCAAGTTCAT
AGAAATGATTTTTTGCAACTTTTGATTAATATGAAAAATAGCGAAAATGAAACAATGACT
TTTAATGAAATTGCAGCAGCTAGTTTTGGATTTTTCCTTGCTGGTTACGAGACAAGTTCT
AGCACAATGACATTTTGTGCCTATGAGCTCGCATTAAATCAAAACATTCAAGAGAAGATT
CGACTTGAAATCAGTCAAGTGCTTTTGAAATACAACGGTAAAGTCACTTATGAAGCTATA
ATGGAAATGAAATATCTTGACATGGTTTTCAATGAGACACTTCGTAAATATCCTGTGATA
GATGTACAAAGAAGAAAGTCAGTAAAAGATTTTAAAATTCCAAATACAAATTTGGTTATT
CCTGCTGAAACTATAATTATGATTCCTGTTTATGCACTTCAAAATGATGAAAGATTTTGG
GAAAATCCAGATAAATTTGACCCTGAAAGGTTTACTCAAGAAGAAATTGCTAAAAGACAT
CCATTCTGTTATATTCCATTCAGTGAAGGCCCAAGACAGTGTATTGGCATGAGATTTGGT
CAAATGCAGACTAAAATAGGAATTGTTAAATTACTAATGAACTTTAAAATTCAACCATGT
GAAAAGACAACAATACCAATGAAATTTGTGCCAAATGCAGTCTTTCAAACACCAATAGGA
GGGATGTGGCTTAAAATAGAGAAGTTATAG

>g15291.t1 Gene=g15291 Length=489
MLLQIIFILFSIYLWFQYKFLYWKKLGFSHVPGKIPVGSGSDVGSKEHLCDFLKREYDKF
KNISPAFGVYFMTKPVLVPTDPELIRDIFVRNFETFHERGLSFCEKADPLSQHLFFKNGQ
EWKDLRGKLTQVFTSGRMKMMFPNVLEKSDNMINYLKSCAEINDALEMKEVFSSFTTEVI
ADVAFGFLTECIDNPNNEFRRMGNAVFEPTAMEHIKLFFIMSYGRLASFLGIGLNRKATI
KFFMGIVQDVLKFREDNQVHRNDFLQLLINMKNSENETMTFNEIAAASFGFFLAGYETSS
STMTFCAYELALNQNIQEKIRLEISQVLLKYNGKVTYEAIMEMKYLDMVFNETLRKYPVI
DVQRRKSVKDFKIPNTNLVIPAETIIMIPVYALQNDERFWENPDKFDPERFTQEEIAKRH
PFCYIPFSEGPRQCIGMRFGQMQTKIGIVKLLMNFKIQPCEKTTIPMKFVPNAVFQTPIG
GMWLKIEKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g15291.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 11 489 6.9E-130
2 g15291.t1 PANTHER PTHR24292 CYTOCHROME P450 5 489 1.6E-170
3 g15291.t1 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 5 489 1.6E-170
9 g15291.t1 PRINTS PR00463 E-class P450 group I signature 60 79 1.5E-20
8 g15291.t1 PRINTS PR00463 E-class P450 group I signature 283 300 1.5E-20
11 g15291.t1 PRINTS PR00385 P450 superfamily signature 294 311 6.0E-11
7 g15291.t1 PRINTS PR00463 E-class P450 group I signature 303 329 1.5E-20
13 g15291.t1 PRINTS PR00385 P450 superfamily signature 348 359 6.0E-11
4 g15291.t1 PRINTS PR00463 E-class P450 group I signature 356 374 1.5E-20
6 g15291.t1 PRINTS PR00463 E-class P450 group I signature 389 413 1.5E-20
5 g15291.t1 PRINTS PR00463 E-class P450 group I signature 424 434 1.5E-20
12 g15291.t1 PRINTS PR00385 P450 superfamily signature 425 434 6.0E-11
10 g15291.t1 PRINTS PR00463 E-class P450 group I signature 434 457 1.5E-20
14 g15291.t1 PRINTS PR00385 P450 superfamily signature 434 445 6.0E-11
1 g15291.t1 Pfam PF00067 Cytochrome P450 57 480 3.6E-96
19 g15291.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
20 g15291.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
18 g15291.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 489 -
16 g15291.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 427 436 -
15 g15291.t1 SUPERFAMILY SSF48264 Cytochrome P450 47 487 5.63E-111

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values