Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 6A1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15292 g15292.t2 TSS g15292.t2 4846208 4846208
chr_4 g15292 g15292.t2 isoform g15292.t2 4846238 4846997
chr_4 g15292 g15292.t2 exon g15292.t2.exon1 4846238 4846997
chr_4 g15292 g15292.t2 cds g15292.t2.CDS1 4846238 4846996
chr_4 g15292 g15292.t2 TTS g15292.t2 4847909 4847909

Sequences

>g15292.t2 Gene=g15292 Length=760
ATGTTGATTTCAGTGCTCTTAATATTATTTTGCATTTATCTTTGGTTTTTAAATAAATTT
TCATATTGGAAAAAACTTGGCTTTCCATATTCACCTGGAAAATTTTTATTAGGCAGTGGA
CCAGGCATTGGCATTACAGAACATCCAAGTTATTTTGTAAAGCGTGAATATGAAAAATTT
AAAAATTCTGCACCAGCATTTGGAGCATATTTGATGGCATATCCAATCTTAGTGCCCACT
GATCCAGATTTAATCAGAGACATTTTTGTAAGAAAATATGACATTTTTCAAAATAGAGGA
TTTACAGTTAGTGAAAGAGCTGATCCATTATCGCAACATTTACTTTTTAAAAATGATGAT
GAATGGAAAAATTTAAGAACAAAACTGAGTCCAACATTTACCAGTTCTCGAATGAAAATG
ATGTTTACAAATGTAGCTGCCAAAGCTGATCGAATGGTTGAATATTTAATGCCATATGCA
GAAAAAAATGAATCTATTGAAATGAAAGAAATTTACAGTTCATTTTCTACTGAAATTATT
GCTGATGTTGCATTTGGGATCCAAATTAAATGCTTAGGAAATCCTGAAAATGAATTCAGA
AAAATGGCAAATATTGTCTTTCAACCGTCAATTTTGGAAAATTTAAAACTTTTCTTTTTG
ATTGCTTTTTCTAGAACTGCAACATTTCTTAACATTGGCTATACAAATCCAGAAATTATT
TCGTTCTTTATGAAGATTGTTAAAGAAACTTTGGATTATC

>g15292.t2 Gene=g15292 Length=253
MLISVLLILFCIYLWFLNKFSYWKKLGFPYSPGKFLLGSGPGIGITEHPSYFVKREYEKF
KNSAPAFGAYLMAYPILVPTDPDLIRDIFVRKYDIFQNRGFTVSERADPLSQHLLFKNDD
EWKNLRTKLSPTFTSSRMKMMFTNVAAKADRMVEYLMPYAEKNESIEMKEIYSSFSTEII
ADVAFGIQIKCLGNPENEFRKMANIVFQPSILENLKLFFLIAFSRTATFLNIGYTNPEII
SFFMKIVKETLDY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15292.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 11 253 1.8E-44
2 g15292.t2 PANTHER PTHR24292 CYTOCHROME P450 5 253 1.9E-61
3 g15292.t2 PANTHER PTHR24292:SF95 CYP6A16, ISOFORM B-RELATED 5 253 1.9E-61
5 g15292.t2 PRINTS PR00464 Group II E-class P450 signature 119 139 1.3E-6
4 g15292.t2 PRINTS PR00464 Group II E-class P450 signature 174 192 1.3E-6
1 g15292.t2 Pfam PF00067 Cytochrome P450 36 249 4.3E-21
9 g15292.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
10 g15292.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
11 g15292.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
12 g15292.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
8 g15292.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 253 -
6 g15292.t2 SUPERFAMILY SSF48264 Cytochrome P450 20 252 1.7E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed