General information for g15292.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cytochrome P450 6A1.
Parent gene
- The parent gene g15292 is located on chr_4: 4847824..4849633 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15292 | g15292.t4 | TSS | g15292.t4 | 4846208 | 4846208 |
| chr_4 | g15292 | g15292.t4 | isoform | g15292.t4 | 4846238 | 4847824 |
| chr_4 | g15292 | g15292.t4 | exon | g15292.t4.exon1 | 4846238 | 4846997 |
| chr_4 | g15292 | g15292.t4 | cds | g15292.t4.CDS1 | 4846238 | 4846997 |
| chr_4 | g15292 | g15292.t4 | TTS | g15292.t4 | 4846719 | 4846719 |
| chr_4 | g15292 | g15292.t4 | exon | g15292.t4.exon2 | 4847251 | 4847607 |
| chr_4 | g15292 | g15292.t4 | cds | g15292.t4.CDS2 | 4847251 | 4847276 |
| chr_4 | g15292 | g15292.t4 | exon | g15292.t4.exon3 | 4847659 | 4847824 |
Sequences
>g15292.t4 Gene=g15292 Length=1283
ATGTTGATTTCAGTGCTCTTAATATTATTTTGCATTTATCTTTGGTTTTTAAATAAATTT
TCATATTGGAAAAAACTTGGCTTTCCATATTCACCTGGAAAATTTTTATTAGGCAGTGGA
CCAGGCATTGGCATTACAGAACATCCAAGTTATTTTGTAAAGCGTGAATATGAAAAATTT
AAAAATTCTGCACCAGCATTTGGAGCATATTTGATGGCATATCCAATCTTAGTGCCCACT
GATCCAGATTTAATCAGAGACATTTTTGTAAGAAAATATGACATTTTTCAAAATAGAGGA
TTTACAGTTAGTGAAAGAGCTGATCCATTATCGCAACATTTACTTTTTAAAAATGATGAT
GAATGGAAAAATTTAAGAACAAAACTGAGTCCAACATTTACCAGTTCTCGAATGAAAATG
ATGTTTACAAATGTAGCTGCCAAAGCTGATCGAATGGTTGAATATTTAATGCCATATGCA
GAAAAAAATGAATCTATTGAAATGAAAGAAATTTACAGTTCATTTTCTACTGAAATTATT
GCTGATGTTGCATTTGGGATCCAAATTAAATGCTTAGGAAATCCTGAAAATGAATTCAGA
AAAATGGCAAATATTGTCTTTCAACCGTCAATTTTGGAAAATTTAAAACTTTTCTTTTTG
ATTGCTTTTTCTAGAACTGCAACATTTCTTAACATTGGCTATACAAATCCAGAAATTATT
TCGTTCTTTATGAAGATTGTTAAAGAAACTTTGGATTATCACTTCGTACTGAAATTAATG
AAGTAATTGCAAAACACAATGGAAAAGTCACTTATGAGGCTATAATGGAAATGAAATATC
TTGACATGGTGTTTAATGAGTCTATGAGAAAATTTCCAATTGTAGATTTACAGCATCGTA
AGAATCTTAAAGATTATCGCATTCCTAACACAAATTTGGTAATTAAAGCTGGAACTACAA
TAATGATTCCAGTTTACTGTCTACACAATGATGAAAGATTTTGGGAAAATCCAGATAAAT
TTGACCCTGAAAGATTCACATCTGAAAATATTAAGAAACGACATGCATTTTGTTATATTC
CATTTAGTGAAGGACCAAGACAGTGTATTGGCATGAGATTTGGTCAAATGCAGACAAAAG
TTGGACTTGTAAAGTTGTTGTTAAAATATAAAATTTTACCATGTGAAAAAACTATTTATC
CTATGAAATTCGTTCCTAATGCAACATTTCAATGTCCTGTTGGTGGAATGTGGTTGAAAT
TGGAAAAACTTGAAAATTCATGA
>g15292.t4 Gene=g15292 Length=261
MLISVLLILFCIYLWFLNKFSYWKKLGFPYSPGKFLLGSGPGIGITEHPSYFVKREYEKF
KNSAPAFGAYLMAYPILVPTDPDLIRDIFVRKYDIFQNRGFTVSERADPLSQHLLFKNDD
EWKNLRTKLSPTFTSSRMKMMFTNVAAKADRMVEYLMPYAEKNESIEMKEIYSSFSTEII
ADVAFGIQIKCLGNPENEFRKMANIVFQPSILENLKLFFLIAFSRTATFLNIGYTNPEII
SFFMKIVKETLDYHFVLKLMK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15292.t4 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 11 | 256 | 1.4E-44 |
| 2 | g15292.t4 | PANTHER | PTHR24292 | CYTOCHROME P450 | 5 | 254 | 7.9E-62 |
| 3 | g15292.t4 | PANTHER | PTHR24292:SF95 | CYP6A16, ISOFORM B-RELATED | 5 | 254 | 7.9E-62 |
| 5 | g15292.t4 | PRINTS | PR00464 | Group II E-class P450 signature | 119 | 139 | 1.3E-6 |
| 4 | g15292.t4 | PRINTS | PR00464 | Group II E-class P450 signature | 174 | 192 | 1.3E-6 |
| 1 | g15292.t4 | Pfam | PF00067 | Cytochrome P450 | 36 | 249 | 4.0E-21 |
| 9 | g15292.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 10 | g15292.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 11 | g15292.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 14 | - |
| 12 | g15292.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 8 | g15292.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 261 | - |
| 6 | g15292.t4 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 20 | 253 | 1.57E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0004497 | monooxygenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed