General information for g15300.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15300 is located on chr_4: 4885058..4886455 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15300 | g15300.t1 | isoform | g15300.t1 | 4885058 | 4886455 |
| chr_4 | g15300 | g15300.t1 | exon | g15300.t1.exon1 | 4885058 | 4886455 |
| chr_4 | g15300 | g15300.t1 | cds | g15300.t1.CDS1 | 4885058 | 4886455 |
| chr_4 | g15300 | g15300.t1 | TSS | g15300.t1 | 4886468 | 4886468 |
| chr_4 | g15300 | g15300.t1 | TTS | g15300.t1 | NA | NA |
Sequences
>g15300.t1 Gene=g15300 Length=1398
ATGAAAGAAATCAAAAGCAATTCACAAAAAAAATTAAAATTAATTTTGCTTGAATTTTCA
TTTTTCTTATTTATTTTTGCAACAATTTTGCCATCAAATTTGTTATTAAATCAAATTCTA
AAGCAGTCGTGCATTCAATCAGGATATAAGAAATTAATTTGTGATGAAATAAGTCAAAGT
AATAACAATAAAACAGAAAAAATTGAAGAAGAACTTCAACCATATGTGGCTAAAATTAAT
GTCATCATAACTTTTCTATACACAAGTGTTCCTGCCATTCTTCAACTATTTCTCGGTCCA
TGGTCTGATAAATATGGAAGAAAAAGTGTCATGAATTTAGCATCAATCGGTTATGTTTTA
ACTCATACATTAGCTGCTGCTATTTGTTATTATTCTGACAACATTCATCCGCTACCACCT
TGGATATTTATTTTTTGCTACATTCCTGTAAATTTTCTTGGTGGATTTCAATCAATGCTG
ACAGCAATAGTTTGCTATATTAAAGACACTTGTGAGGAATCAAAATGTTTTTATCATTTT
ACAATTATTGAAATTTTAATACTGTTTGGTTATTTCTGTGGGATTCTTTTGTGTTCAATT
TTAGTAGAATTAACAAATGCTGTTAATATTTTTATAATTGCTGCAATTTGTACTTTTATT
GGTGCAATAATTGTTATATTTTTTATTGATGAATCACTCAAAGAAATTGAAAAAAGTTAT
AATTTAAATTCAATACTTTCATGTTCTCATATTTTTGACATGATAAAAACTTGTCTTATT
CCAAGAGCATTACATCAACGATCAATTTTATTAAGTCTAATTTTTATTATAAGTTTAAAT
AAATTTGTTACTGATGATGAAAGAAATCTTTGTTATCTTTTTGAACGTGTTGTTTATAAT
TGGACATTAAATGACCATAACTTTTTTGAAGCTACAAAAATGCTTATGACAGTTGCTGGA
ACTACTTTTGCAATGACAGTACTGAAAAACTTTTTAAAAATTTCTGATTTAATTTTAATT
GCATTTGCAATTTTTAGTAATTTAATTGATAACATTTTAAGAGCATTTGCAAAACAATCA
TGGCAAGTTTATGTAATTTCAATATTTTCTAGTACAAGAATGATTGTTCATCCTTTATGT
CGATCTTTAATTTCATCAATTGTATTACAAAATGAAATGGGAAAAGTTATGAGTTTTGCA
TCAACCATTGAATCAATTGTAAATTTTATTTTAATGCCAATTTATTTAAGTGTTTATGAA
GCGACTTTTTTAACATTTCCCGGAGCTTTTTATTTTGTTTCTGCTGGAATTGGAATTATT
ACACTTTTAATTGTATTTTATGTGATTTTTGTTAATGGTTTTGTTGTTAATATTAAGAAA
AAATATGTAGAAATTTAA
>g15300.t1 Gene=g15300 Length=465
MKEIKSNSQKKLKLILLEFSFFLFIFATILPSNLLLNQILKQSCIQSGYKKLICDEISQS
NNNKTEKIEEELQPYVAKINVIITFLYTSVPAILQLFLGPWSDKYGRKSVMNLASIGYVL
THTLAAAICYYSDNIHPLPPWIFIFCYIPVNFLGGFQSMLTAIVCYIKDTCEESKCFYHF
TIIEILILFGYFCGILLCSILVELTNAVNIFIIAAICTFIGAIIVIFFIDESLKEIEKSY
NLNSILSCSHIFDMIKTCLIPRALHQRSILLSLIFIISLNKFVTDDERNLCYLFERVVYN
WTLNDHNFFEATKMLMTVAGTTFAMTVLKNFLKISDLILIAFAIFSNLIDNILRAFAKQS
WQVYVISIFSSTRMIVHPLCRSLISSIVLQNEMGKVMSFASTIESIVNFILMPIYLSVYE
ATFLTFPGAFYFVSAGIGIITLLIVFYVIFVNGFVVNIKKKYVEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g15300.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 72 | 448 | 4.3E-26 |
| 2 | g15300.t1 | PANTHER | PTHR23507 | ZGC:174356 | 9 | 447 | 9.4E-71 |
| 3 | g15300.t1 | PANTHER | PTHR23507:SF1 | ZGC:174356 | 9 | 447 | 9.4E-71 |
| 1 | g15300.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 74 | 410 | 7.9E-21 |
| 15 | g15300.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 30 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 30 | - |
| 23 | g15300.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 31 | 78 | - |
| 32 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 98 | - |
| 20 | g15300.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 99 | 109 | - |
| 33 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 110 | 130 | - |
| 25 | g15300.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 131 | 141 | - |
| 35 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 142 | 165 | - |
| 19 | g15300.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 166 | 176 | - |
| 29 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 202 | - |
| 22 | g15300.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 203 | 207 | - |
| 28 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 208 | 229 | - |
| 16 | g15300.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 230 | 330 | - |
| 27 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 331 | 349 | - |
| 24 | g15300.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 350 | 360 | - |
| 31 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 361 | 384 | - |
| 17 | g15300.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 385 | 395 | - |
| 26 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 416 | - |
| 21 | g15300.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 417 | 427 | - |
| 34 | g15300.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 428 | 451 | - |
| 18 | g15300.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 452 | 465 | - |
| 13 | g15300.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 81 | 448 | 9.16E-27 |
| 6 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 37 | - |
| 11 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 77 | 99 | - |
| 12 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 109 | 131 | - |
| 5 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 160 | - |
| 9 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 180 | 202 | - |
| 8 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 207 | 229 | - |
| 10 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 323 | 345 | - |
| 7 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 397 | 419 | - |
| 4 | g15300.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 429 | 451 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed