General information for g1532.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g1532 is located on chr_3: 11649214..11652353 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1532 | g1532.t1 | isoform | g1532.t1 | 11649214 | 11652353 |
| chr_3 | g1532 | g1532.t1 | exon | g1532.t1.exon1 | 11649214 | 11649402 |
| chr_3 | g1532 | g1532.t1 | cds | g1532.t1.CDS1 | 11649214 | 11649402 |
| chr_3 | g1532 | g1532.t1 | exon | g1532.t1.exon2 | 11650330 | 11650888 |
| chr_3 | g1532 | g1532.t1 | cds | g1532.t1.CDS2 | 11650330 | 11650888 |
| chr_3 | g1532 | g1532.t1 | exon | g1532.t1.exon3 | 11651063 | 11651406 |
| chr_3 | g1532 | g1532.t1 | cds | g1532.t1.CDS3 | 11651063 | 11651406 |
| chr_3 | g1532 | g1532.t1 | exon | g1532.t1.exon4 | 11651476 | 11651546 |
| chr_3 | g1532 | g1532.t1 | cds | g1532.t1.CDS4 | 11651476 | 11651546 |
| chr_3 | g1532 | g1532.t1 | exon | g1532.t1.exon5 | 11651605 | 11651730 |
| chr_3 | g1532 | g1532.t1 | cds | g1532.t1.CDS5 | 11651605 | 11651730 |
| chr_3 | g1532 | g1532.t1 | exon | g1532.t1.exon6 | 11651890 | 11651954 |
| chr_3 | g1532 | g1532.t1 | cds | g1532.t1.CDS6 | 11651890 | 11651954 |
| chr_3 | g1532 | g1532.t1 | exon | g1532.t1.exon7 | 11652154 | 11652353 |
| chr_3 | g1532 | g1532.t1 | cds | g1532.t1.CDS7 | 11652154 | 11652353 |
| chr_3 | g1532 | g1532.t1 | TTS | g1532.t1 | 11652446 | 11652446 |
| chr_3 | g1532 | g1532.t1 | TSS | g1532.t1 | NA | NA |
Sequences
>g1532.t1 Gene=g1532 Length=1554
ATGATTACAATACCGGAGTTTTATCGTAATCGAGATGTTTTTATAACCGGTGCTACAGGC
TTTATCATGAAAGTGCTAATTGAAAAACTATTTCGCTCTTGCAGCGATGTCGGACGTATT
TTTGTGTTGATGCGAGAAAAACGCTCGAAATCAATCAATGAACGACTGGAAGATATTAAA
AAAATGGCTCTCTTTTCATTGTTGTTGGAAAAAAATCCTGAAATTTTCAATAAGCTTGTA
CCAATTGAAGGTGATGTGACAAAAAATGGAATGGCTTTAAGTGAGGAATCACGTGAGATG
CTCAAAAATGTTTCAATTATTTTTCATTCTGCTGCTTCTGTTCGATTTGATGACAATTTA
AAAGATGCTGTGATTTTAAATACTCGTGGAACACTTGAAACTATCAAATTTGCACTAACA
TTAAAAAATTTAATTTCTTTTATTCATGTTTCAACAACTTATTGTTATCCAAATAGAGAA
TCAACAAATGAAGAAGTTTATCCTGTTGAATGTGATTGGCAGAAAACGATTGAATTGGCT
GAAAAGTTTGATATGGAAACACTTGAATGCTTTATGCCTCATTACACAGGTTTCTTGCCC
AACACTTATGTCTTTACAAAAGCGCTTGCTGAGAAAATTTGTGAAAGCTACAAAGAACAA
CTGCCTATCACTATTGTAAGACCGAGTATTGTTGTTGGTACTGAAATTGAGCCATTTGGT
GGTTGGTGTGACAATTATAATGGACCTGTTGGTCTTTTAACAGCCTGTGGTATCGGAATC
ATGCGTACAATGCATGCTTCCTGGGAAGCAATTTTGAACTGTGTAGCTGTCGATGTTGTT
GCAAAAACAGTAATCGTTGCGGCGTGGAAATCTGCAATGGAAAATGCGAAAATACAGTCA
ATGGTCAACAATGGCAGTATGAAGCAGTGTAATGAGCAATTGCGAGTTTACAACTGTGCT
TCGTTACACAATATGTCATTGAAATTGCTCGTTTACGAGGGACAGTATGCTGTGAGGAAA
TTCCCTTTCGAGAAAATTGTGTATATGCCAGGCGGTGGTGTAACTCTATGCAGATTCATG
AACTATTTTAGAATTGTGTGCTTTCAACTAACGCCAGCCGCATTAATTGATCTCGTTTTG
AAGTTATATGGAAAGAAACCATTTTTGCTATCATTGCAAAGAAAAATTGCTCATGCGAGC
AGTGCTTTGAAGACTTTTGTTCACACTGAATGGAATTTTGGAGTTGAAAATTTTGAAAAA
TTAAGAAATGGATTGTTGCCTGAGGATGAAGAAACTTTTAGTCTACAACGAAAAATCGAA
AAAGACATCGACTACTATGAAGTTCAAATTTTAGGCGCTCGAAGATATCTTTTGAAAGAA
TGCGATTCCACACTTCCGGCTTGCCGTCGTCGAATCAAATATCTTTTAATATTCGATACA
TTCATGCGATTTCTTCTATTTGGCTACATCTTTTATCGAATTGCAAATAAATTTGGGATT
TTTATCAACTACGAGGGACATTACAGCAATGAAACAATTATCGAGAAAATTTAA
>g1532.t1 Gene=g1532 Length=517
MITIPEFYRNRDVFITGATGFIMKVLIEKLFRSCSDVGRIFVLMREKRSKSINERLEDIK
KMALFSLLLEKNPEIFNKLVPIEGDVTKNGMALSEESREMLKNVSIIFHSAASVRFDDNL
KDAVILNTRGTLETIKFALTLKNLISFIHVSTTYCYPNRESTNEEVYPVECDWQKTIELA
EKFDMETLECFMPHYTGFLPNTYVFTKALAEKICESYKEQLPITIVRPSIVVGTEIEPFG
GWCDNYNGPVGLLTACGIGIMRTMHASWEAILNCVAVDVVAKTVIVAAWKSAMENAKIQS
MVNNGSMKQCNEQLRVYNCASLHNMSLKLLVYEGQYAVRKFPFEKIVYMPGGGVTLCRFM
NYFRIVCFQLTPAALIDLVLKLYGKKPFLLSLQRKIAHASSALKTFVHTEWNFGVENFEK
LRNGLLPEDEETFSLQRKIEKDIDYYEVQILGARRYLLKECDSTLPACRRRIKYLLIFDT
FMRFLLFGYIFYRIANKFGIFINYEGHYSNETIIEKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1532.t1 | CDD | cd05236 | FAR-N_SDR_e | 13 | 321 | 4.89007E-109 |
| 11 | g1532.t1 | CDD | cd09071 | FAR_C | 368 | 458 | 3.99846E-22 |
| 6 | g1532.t1 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 349 | 1.0E-66 |
| 3 | g1532.t1 | PANTHER | PTHR11011:SF24 | FATTY ACYL-COA REDUCTASE | 3 | 496 | 4.4E-170 |
| 4 | g1532.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 3 | 496 | 4.4E-170 |
| 1 | g1532.t1 | Pfam | PF07993 | Male sterility protein | 15 | 283 | 5.5E-68 |
| 2 | g1532.t1 | Pfam | PF03015 | Male sterility protein | 368 | 460 | 4.3E-21 |
| 8 | g1532.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 473 | - |
| 9 | g1532.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 474 | 492 | - |
| 7 | g1532.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 493 | 517 | - |
| 5 | g1532.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 295 | 3.11E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed