Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15324 g15324.t1 TTS g15324.t1 4965353 4965353
chr_4 g15324 g15324.t1 isoform g15324.t1 4965444 4970520
chr_4 g15324 g15324.t1 exon g15324.t1.exon1 4965444 4965704
chr_4 g15324 g15324.t1 cds g15324.t1.CDS1 4965444 4965704
chr_4 g15324 g15324.t1 exon g15324.t1.exon2 4965761 4967169
chr_4 g15324 g15324.t1 cds g15324.t1.CDS2 4965761 4967169
chr_4 g15324 g15324.t1 exon g15324.t1.exon3 4967224 4967285
chr_4 g15324 g15324.t1 cds g15324.t1.CDS3 4967224 4967285
chr_4 g15324 g15324.t1 exon g15324.t1.exon4 4967343 4967502
chr_4 g15324 g15324.t1 cds g15324.t1.CDS4 4967343 4967502
chr_4 g15324 g15324.t1 exon g15324.t1.exon5 4967565 4967676
chr_4 g15324 g15324.t1 cds g15324.t1.CDS5 4967565 4967676
chr_4 g15324 g15324.t1 exon g15324.t1.exon6 4967890 4968096
chr_4 g15324 g15324.t1 cds g15324.t1.CDS6 4967890 4968096
chr_4 g15324 g15324.t1 exon g15324.t1.exon7 4968272 4969680
chr_4 g15324 g15324.t1 cds g15324.t1.CDS7 4968272 4969680
chr_4 g15324 g15324.t1 exon g15324.t1.exon8 4969736 4969797
chr_4 g15324 g15324.t1 cds g15324.t1.CDS8 4969736 4969797
chr_4 g15324 g15324.t1 exon g15324.t1.exon9 4969891 4970050
chr_4 g15324 g15324.t1 cds g15324.t1.CDS9 4969891 4970050
chr_4 g15324 g15324.t1 exon g15324.t1.exon10 4970394 4970520
chr_4 g15324 g15324.t1 cds g15324.t1.CDS10 4970394 4970520
chr_4 g15324 g15324.t1 TSS g15324.t1 4970558 4970558

Sequences

>g15324.t1 Gene=g15324 Length=3969
ATGCCTGCAGTTTCAAAACAATTAAGTGATCTTGATGTAGAAAGAACATTTGTAAATTTT
AACACTGAAGAATTCACAAATTGGTATTATGGTGGTGCTGAAAAAGTTGCTAAAAAGAGA
TTTCTAGAAAAGTACTTCTTATCTGATGAGAGATTAAAGCTTGAAGTTGATACAAGTTAT
CTAAGTTATAAAGAGCGATATGAAGAAGCAATGCGAAGGAGTGTTATTGTTTATGAAAAC
ATCAAAAAATTGCATAAGAAAATGAATGGAAATGACAATGACTTTTTTTCAATTTTGGAC
AATTTAAGAGCAATAACACCATGCATAAATATCGATGGAAATCCCATTATGCTTCATTAT
GGAATGTTTCCATTTGCATTTCAAACTCTTGCAAACGAAGAGCAAAGGTCAGAATGGATT
CCAAAAATCGTTGACTGTAAGGTATTTGGCACTTACGCACAAACTGAGTTAGGTCATGGA
ACTTTTGTTAGAGGCTTGGAAACAACAGCAACTTATGATCCAAAAACTAAAGAATTCATC
ATAAACACACCAAGTTTGTCAGCTTATAAATTCTGGCCAGGAAATTTAGGACATACAGCT
AACCATACAGTTGTTTTTGCTCAATTATACATACAAGGTCAATGTCATGGTGTACAACCA
TTCGTTATGAGAATTCGCGATCAAGAAACTCACAAGCCATTGCCAGGAATAAAAGTTGGT
GATATTGGAAATAAACTTGGTTTTGATACTGTAAGTAATGGATATCTAGCATTTGATAAT
GTCAGAATTCCTCTTAAAAATATGCTTATGGGAAACTCTAAAGTTACACCTGATGGAAAA
TTTATTAAGCTAAATAATCCTTTGCTGAATTATGGTGTTATGCTCTATACAAGAGTTTGT
ATTATTTTAGACGCTACATTGCATATTTCTAAAGCAGCAACAATTGCTACTCGCTATTCA
ATGGTTAGAAGACAAAGTCCAATAAACCCAAATGATCCCGAGCCAAAAATTATCGAACAC
GTTACACAACAATACAAAATATTTCCTGCAATCGCTAAATCGATAATGTTTAAAATTGTT
GCTGATTATTTAGCAGAAAAACGTGTACAAGTCACTGAAGAATTAAAGCGAGGAAATTTA
AAAAGTCTTCCAGAATTGCATGCACTTTCGTGCTGTTTAAAAGCTGTTTGCACAAATGAA
GCAGTTCAGACTATTGAAACTTGCCGTCTGGCATGTGGTGGACATGGATTTATGAATGCT
TCAGGTTTTTACAGTCTTTATAAATTTGCTGTTACAATTCAACATTATGAAGGCGACAAT
ACAATTTTACTTTTACAAACTGCTCGATATTTGATGAAATCTTTTGATAAAGCAACAAAG
GCTGAAATTCTTGATGACGGTGTGAAATATTTAAAAATCTTCATCGAACTTAATGAAAAA
CGACAAAATTTTGAAAATTCTATTTTTGGAATTTTACGAGCATTTCAAATTGCAGCTGCT
GGAAAAATTTATTCAGCATGGAAAAATATTGAAGAAAAAAAGAAATTTATGACAGTTGAA
GAAGCAACAAATCGAACTGGAATTGAATTGATAAAAGCAGCAAAATTTCATTGTTATGTC
AACATTCTTGAAATAACAATGAGATTTATTGAAAAATCAATTGAAAAAGTTTCGCCAGCA
CTTGGGCTTGTTTTAAAAAATATTTTTGAATTTTATGCAACTGATATGATGCTGAATAAT
ATTGGGGAAATCCTTAAGTTTGTCAACATAACAAATGATGACATTGAAAAGCTTCAAATG
CGAATTGAAGTTTTATTGAAATTCTTGCGAACATCAGCAATTGGCATCGTTGATGGTTTT
GACTTTTCAGATCAAAGTTTATCGTCAACAATTGGTGCATATGATGGAAATGTTTATGAA
AATATATTTGCTGCTGCCAAGAAATCGCCACTTAATCAAGAAGATGCAATGTCAAAAGAA
TTACAAGAAGAACGAAACAAAATTAAATTTAATGTTGAAGAATTTACAAATTGGTTTTAT
GGTGGACCTGAAAATGTCAAAAGAAAAAATTCTTTAGAAAATTATTTCTTATCGGATCCA
AAGTTGAATTTAAATCTTGATACGAGTTATCTTAGTTATAAAGAACAATATGAAGAAGCA
ATAAGAAGAAGTTGTATTGTACATGACAAAATGAGAACTCTTTTACTGGACTGTTTTGAT
GATCAAGATGAATTGCTTCATGTACTTCTACATTTTCAAAGTGCTATAGGTCGAATTAAT
CCTGAAAGTGATCCACTAATTCTTCACTTTACAATGTTTGCATTTACAATGCTTAATTTG
ACGAATGATGAACAAAAAGCTGAATGGTTACCAAAAGTTTTAAACTGCAGCATAATTGGC
ACTTACGCACAAACAGAAATGGGCCATGGAACATATTTGAATCGTCTTGAAACAACAGCA
ACTTATGATCCAAAAACTAAAGAATTTATTTTGAATTCACCAACTTTAACTTCCTATAAA
TTCTGGCCAGGAAATTTAGGACATACTGCAAATCATGCTATTGTTATGGCTCAATTATAT
ACTCAAGGTCAATGTTATGGAGTTCATCCTTTCATAGTTCAATTAAGAGACCTGGAAACT
CATAAATTATTAAATGGTGTAAAGACTGGTGACATTGGAAATAAAGTTGGATTTCAAACA
GTTAACAATGGCTATTTATGTCTAAGCAATGTCAGAATTCCACTTAAAAATATGCTAATG
AAAAGTTCTAAAGTTCTTGAAGATGGAACTTATGTAAAACCAAAAAGTTCAAAACTTAAT
TATGGCACAATGATGTTTATAAGAGTAAAATTTGTTACTGCTATGGCGACTTATCTTGCA
AAAGCAGCGACAATTGCAACTCGCTATTCAATGGTAAGAAGACAAAGTCCAATAAATCCG
AATGATCTCGAACCGAAAATTATCGAACATAAAACACAGCAGTATAAAGTTTTTGTGCCA
TTAGCAAAAGCAATCATTTATAGAGTTGTTTCAAGTTATCTTTCTAATTTACTATTTGAT
GTCACAAAAGAATCAAATGAAGGAAATTTGGAGCGTCTTCCTGAGCTTCATGCATTGGCT
TGTTGCATAAAAGCAGTCAGTACATATGAAGCTGATAAAGATGTTGAAATGTGCAGACTT
GCATGCGGTGGTCATGGTTATTTGAAATCTGCAGGATTTACTGGTATGCAAGGATATATT
AAAGCAACTGTAACTGGTGAAGGTGAAAATACAGTGATGCATTTGCAAACAGCTCGTTAT
TTAATGAAAACATTCACAAAAGCAAGAAATGGTGAGAAATTGACTGAAGGTGTTGCTTAT
TTGAGTGAATTTATCAACTTAAATGGTCGACGTTTGATTTTTGATGATTCAATTCGAGGA
ATTTTGAGAGCAATTCAAACTACAGCTGCTGGTAAAATTGCAATGGCTTGGAAACACATT
GAAGAAAGAAAGAAAAATTTCACAGCAGAAGAAGCAGCAAGTTATACTGGAATTGAATTG
ACAAGAGCATCAGAACTTCATTGTCACACTTGTTTGCTACAAATTGCAATAGTTGAAATT
GAAAAAGCAATCGGGAAAGTTTCACGAGCATTGGGAGAAATTTTGAGAAATGTTTTGGAA
CTTTATGCTGTTGATACAATTTTGCGACTTTCTGGTGATGTTTTATTGTTTGTTAACATG
ACAGCTGAAGATGTTGAAAAACTTCAAAAACGTTTGGAAAATTCTTTACAATTTTTCAGA
AGCACTGCAATTGGCATCGTTGATGGATTTGATTTTTCTGATCAAATTTTGGATTCCACA
CTTGGTGCATATGATGGAAATGTTTATGAAAATTTATTTGCTGCTACCAAAAAGTCAACA
TTGAATGACGAAGAAGTCAACAAAAGTTTCCATTTGTATTTGAAGCCATTTATGAAGGCA
AATTTGTAA

>g15324.t1 Gene=g15324 Length=1322
MPAVSKQLSDLDVERTFVNFNTEEFTNWYYGGAEKVAKKRFLEKYFLSDERLKLEVDTSY
LSYKERYEEAMRRSVIVYENIKKLHKKMNGNDNDFFSILDNLRAITPCINIDGNPIMLHY
GMFPFAFQTLANEEQRSEWIPKIVDCKVFGTYAQTELGHGTFVRGLETTATYDPKTKEFI
INTPSLSAYKFWPGNLGHTANHTVVFAQLYIQGQCHGVQPFVMRIRDQETHKPLPGIKVG
DIGNKLGFDTVSNGYLAFDNVRIPLKNMLMGNSKVTPDGKFIKLNNPLLNYGVMLYTRVC
IILDATLHISKAATIATRYSMVRRQSPINPNDPEPKIIEHVTQQYKIFPAIAKSIMFKIV
ADYLAEKRVQVTEELKRGNLKSLPELHALSCCLKAVCTNEAVQTIETCRLACGGHGFMNA
SGFYSLYKFAVTIQHYEGDNTILLLQTARYLMKSFDKATKAEILDDGVKYLKIFIELNEK
RQNFENSIFGILRAFQIAAAGKIYSAWKNIEEKKKFMTVEEATNRTGIELIKAAKFHCYV
NILEITMRFIEKSIEKVSPALGLVLKNIFEFYATDMMLNNIGEILKFVNITNDDIEKLQM
RIEVLLKFLRTSAIGIVDGFDFSDQSLSSTIGAYDGNVYENIFAAAKKSPLNQEDAMSKE
LQEERNKIKFNVEEFTNWFYGGPENVKRKNSLENYFLSDPKLNLNLDTSYLSYKEQYEEA
IRRSCIVHDKMRTLLLDCFDDQDELLHVLLHFQSAIGRINPESDPLILHFTMFAFTMLNL
TNDEQKAEWLPKVLNCSIIGTYAQTEMGHGTYLNRLETTATYDPKTKEFILNSPTLTSYK
FWPGNLGHTANHAIVMAQLYTQGQCYGVHPFIVQLRDLETHKLLNGVKTGDIGNKVGFQT
VNNGYLCLSNVRIPLKNMLMKSSKVLEDGTYVKPKSSKLNYGTMMFIRVKFVTAMATYLA
KAATIATRYSMVRRQSPINPNDLEPKIIEHKTQQYKVFVPLAKAIIYRVVSSYLSNLLFD
VTKESNEGNLERLPELHALACCIKAVSTYEADKDVEMCRLACGGHGYLKSAGFTGMQGYI
KATVTGEGENTVMHLQTARYLMKTFTKARNGEKLTEGVAYLSEFINLNGRRLIFDDSIRG
ILRAIQTTAAGKIAMAWKHIEERKKNFTAEEAASYTGIELTRASELHCHTCLLQIAIVEI
EKAIGKVSRALGEILRNVLELYAVDTILRLSGDVLLFVNMTAEDVEKLQKRLENSLQFFR
STAIGIVDGFDFSDQILDSTLGAYDGNVYENLFAATKKSTLNDEEVNKSFHLYLKPFMKA
NL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g15324.t1 Gene3D G3DSA:1.10.540.10 - 21 148 0
20 g15324.t1 Gene3D G3DSA:2.40.110.10 - 150 283 0
24 g15324.t1 Gene3D G3DSA:1.20.140.10 - 289 461 0
22 g15324.t1 Gene3D G3DSA:1.20.140.10 - 488 621 0
18 g15324.t1 Gene3D G3DSA:1.10.540.10 - 671 799 0
19 g15324.t1 Gene3D G3DSA:2.40.110.10 - 800 938 0
23 g15324.t1 Gene3D G3DSA:1.20.140.10 - 939 1112 0
21 g15324.t1 Gene3D G3DSA:1.20.140.10 - 1137 1271 0
8 g15324.t1 PANTHER PTHR10909:SF250 ACYL-COENZYME A OXIDASE 9 656 0
10 g15324.t1 PANTHER PTHR10909 ELECTRON TRANSPORT OXIDOREDUCTASE 9 656 0
7 g15324.t1 PANTHER PTHR10909:SF250 ACYL-COENZYME A OXIDASE 658 1321 0
9 g15324.t1 PANTHER PTHR10909 ELECTRON TRANSPORT OXIDOREDUCTASE 658 1321 0
1 g15324.t1 Pfam PF14749 Acyl-coenzyme A oxidase N-terminal 21 148 0
4 g15324.t1 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 152 261 0
6 g15324.t1 Pfam PF01756 Acyl-CoA oxidase 491 655 0
2 g15324.t1 Pfam PF14749 Acyl-coenzyme A oxidase N-terminal 671 799 0
3 g15324.t1 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 802 911 0
5 g15324.t1 Pfam PF01756 Acyl-CoA oxidase 1140 1319 0
12 g15324.t1 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 114 273 0
16 g15324.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 290 471 0
14 g15324.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 487 656 0
11 g15324.t1 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 761 929 0
15 g15324.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 938 1122 0
13 g15324.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 1141 1319 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0006635 fatty acid beta-oxidation BP
GO:0003997 acyl-CoA oxidase activity MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0005777 peroxisome CC
GO:0055114 NA NA

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed