General information for g15324.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.
Parent gene
- The parent gene g15324 is located on chr_4: 4969282..4970520 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15324 | g15324.t2 | TTS | g15324.t2 | 4965353 | 4965353 |
| chr_4 | g15324 | g15324.t2 | isoform | g15324.t2 | 4965444 | 4966295 |
| chr_4 | g15324 | g15324.t2 | exon | g15324.t2.exon1 | 4965444 | 4965704 |
| chr_4 | g15324 | g15324.t2 | cds | g15324.t2.CDS1 | 4965444 | 4965704 |
| chr_4 | g15324 | g15324.t2 | exon | g15324.t2.exon2 | 4965761 | 4966295 |
| chr_4 | g15324 | g15324.t2 | cds | g15324.t2.CDS2 | 4965761 | 4966243 |
| chr_4 | g15324 | g15324.t2 | TSS | g15324.t2 | NA | NA |
Sequences
>g15324.t2 Gene=g15324 Length=796
CAGACTTGCATGCGGTGGTCATGGTTATTTGAAATCTGCAGGATTTACTGGTATGCAAGG
ATATATTAAAGCAACTGTAACTGGTGAAGGTGAAAATACAGTGATGCATTTGCAAACAGC
TCGTTATTTAATGAAAACATTCACAAAAGCAAGAAATGGTGAGAAATTGACTGAAGGTGT
TGCTTATTTGAGTGAATTTATCAACTTAAATGGTCGACGTTTGATTTTTGATGATTCAAT
TCGAGGAATTTTGAGAGCAATTCAAACTACAGCTGCTGGTAAAATTGCAATGGCTTGGAA
ACACATTGAAGAAAGAAAGAAAAATTTCACAGCAGAAGAAGCAGCAAGTTATACTGGAAT
TGAATTGACAAGAGCATCAGAACTTCATTGTCACACTTGTTTGCTACAAATTGCAATAGT
TGAAATTGAAAAAGCAATCGGGAAAGTTTCACGAGCATTGGGAGAAATTTTGAGAAATGT
TTTGGAACTTTATGCTGTTGATACAATTTTGCGACTTTCTGGTGATGTTTTATTGTTTGT
TAACATGACAGCTGAAGATGTTGAAAAACTTCAAAAACGTTTGGAAAATTCTTTACAATT
TTTCAGAAGCACTGCAATTGGCATCGTTGATGGATTTGATTTTTCTGATCAAATTTTGGA
TTCCACACTTGGTGCATATGATGGAAATGTTTATGAAAATTTATTTGCTGCTACCAAAAA
GTCAACATTGAATGACGAAGAAGTCAACAAAAGTTTCCATTTGTATTTGAAGCCATTTAT
GAAGGCAAATTTGTAA
>g15324.t2 Gene=g15324 Length=247
MQGYIKATVTGEGENTVMHLQTARYLMKTFTKARNGEKLTEGVAYLSEFINLNGRRLIFD
DSIRGILRAIQTTAAGKIAMAWKHIEERKKNFTAEEAASYTGIELTRASELHCHTCLLQI
AIVEIEKAIGKVSRALGEILRNVLELYAVDTILRLSGDVLLFVNMTAEDVEKLQKRLENS
LQFFRSTAIGIVDGFDFSDQILDSTLGAYDGNVYENLFAATKKSTLNDEEVNKSFHLYLK
PFMKANL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15324.t2 | Gene3D | G3DSA:1.20.140.10 | - | 62 | 196 | 0.0e+00 |
| 2 | g15324.t2 | PANTHER | PTHR10909:SF250 | ACYL-COENZYME A OXIDASE | 6 | 246 | 0.0e+00 |
| 3 | g15324.t2 | PANTHER | PTHR10909 | ELECTRON TRANSPORT OXIDOREDUCTASE | 6 | 246 | 0.0e+00 |
| 1 | g15324.t2 | Pfam | PF01756 | Acyl-CoA oxidase | 64 | 244 | 0.0e+00 |
| 5 | g15324.t2 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 7 | 50 | 2.8e-06 |
| 4 | g15324.t2 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 65 | 244 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0006635 | fatty acid beta-oxidation | BP |
| GO:0003997 | acyl-CoA oxidase activity | MF |
| GO:0005777 | peroxisome | CC |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed