Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15325 g15325.t1 TTS g15325.t1 4970594 4970594
chr_4 g15325 g15325.t1 isoform g15325.t1 4970657 4972900
chr_4 g15325 g15325.t1 exon g15325.t1.exon1 4970657 4970917
chr_4 g15325 g15325.t1 cds g15325.t1.CDS1 4970657 4970917
chr_4 g15325 g15325.t1 exon g15325.t1.exon2 4970972 4972380
chr_4 g15325 g15325.t1 cds g15325.t1.CDS2 4970972 4972380
chr_4 g15325 g15325.t1 exon g15325.t1.exon3 4972436 4972500
chr_4 g15325 g15325.t1 cds g15325.t1.CDS3 4972436 4972500
chr_4 g15325 g15325.t1 exon g15325.t1.exon4 4972562 4972721
chr_4 g15325 g15325.t1 cds g15325.t1.CDS4 4972562 4972721
chr_4 g15325 g15325.t1 exon g15325.t1.exon5 4972783 4972900
chr_4 g15325 g15325.t1 cds g15325.t1.CDS5 4972783 4972900
chr_4 g15325 g15325.t1 TSS g15325.t1 4972973 4972973

Sequences

>g15325.t1 Gene=g15325 Length=2013
ATGCCGGCAATATCAAAAGATTTGCAAGAAGAACGTGAAAAAGTAAATTTTAATATTGAA
GAATTTACAAATTGGTTTTATGGTGGCATTGAGAAAGTAGAAAAGAAAAGATCATTAGAA
AAGCTTCTCTTATCGGATCCAGATTTAAACTTGAGCCTTGATACGAGTTATCTTAGTTAT
AAAGAACAGTATGAAGAAGCAATAAGAAGAAGCACTATTACTTACAGAAAAGTAATTGAT
TTGTTGAAAAAAACCGGTGGCAATCAAATTAAAGCAGGTGCAGTTTTAGAAGTTCTACGA
TCATGTATGATTGGATGTATTAACAAAGAAGGCGATCCTTTAATGCTTCAATTTACAATG
TTTTTATTCATGATGTTTAAATTAACAAATGATGAACAAAAGGCTGAATGGCTTCCTAAA
GTTCTTAATTGCAATATTCTTGGCACTTATGCACAAACTGAACTTGGTCATGGAACAAAT
GTTAGAGGCTTGGAAACAACAGCAACCTATGATCCAATAACTAAAGAATTCATCATAAAC
ACACCAAGTTTGTCAGCTTATAAATTTTGGCCAGGTAACATGGGTCATACTGTCAACTAT
GCAGTTGTTCTTGCACAATTGTATACTAAAGGTCAATGCTATGGAATTCAACCATTTATT
GTTCCAATTAGAGACTTAGAGACACATAAACCTCTACCAGGAATCACAGTTGGTGATATA
GGAAATAAAATGGGCTACATGACTATGAACAATGGATATCTTGCATTCAACAATGTTCGA
ATTCCTTTCAAAAATTTGCTTATGAGAAACGCAAAAATGCTTGAAGATGGAACTTTTATT
AAACCAAAAATTTCTGTACTTAATTATGGTGCTATGAGTTCAATGAGAAATTCAATTTTA
AATGATACTGCAATGATGATGTCACGTGCTGCAACAATTGCTACTCGATATTCTTTAGTC
CGCCGACAGAGTCCGATAAATCCAAATGATCCCGAACCAAAAATTATCGAACATAAAACC
CAGCAGTATAAAGTTTTTGTGCCATTAGCAAAAGCAATCATTTATAGAATTGTTTCAAGT
TATCTTGATGAATTGTTTACCCAAATTCAACAGGAATCAAGTTCAGGAAATTTTGATAGA
TTGAATGAACTTCATGCATTAAATTGCGGTCTAAAAGCTGTGATGTCTGAAGAAGGAACA
AAAGCAATTGAACTTTGCAGACTTGCATGTGGCGGTCATGGTTATTTGAAATCAGCTGGT
TTTGATTCTATTTATCGCTTATGTACAGCTGCACAAACTGGTGAAGGTGAAAATACAGTG
ATGCATTTGCAAACAGCTCGTTATTTAATGAAAACATTCACAAAAGCAAGAAATGGTGAG
AAATTAACTGAAGGTGTTGCTTATTTGAGTGAATTTATCAACTTAAATGGTCGACGTTTG
ATTTTTGATGATTCAATTCGAGGAATTTTGAGGGCAATTCAAACTGCAGCTGCTAGTAAA
ATTGTAATTGCTTGGAAACACATTGAAGAAAGAAAGAAAAATTTCACAGCAGAAGAAGCA
GCCAGTTATACTGGAATTGAATTGACAAGAGCATCAGAACTTCATTGTCACACTTGTTTG
CTACAAATTGCAATAGTTGAAATTGAGAAAGCAATCGGAAAAGTTTCACGAGCATTGGGA
GAAGTTTTGAGAAATGTTTTGGAACTTTATGCTGTTGATACAATTTTGAAACTTTCTGGT
GATGTTTTATTGTTTGTTAACATGACAGCTGAAGATGTTGAAAAACTTCAAAAACGTTTG
GAAAATTCTTTACAATTTTTCAGAAGCACTGCAATTGGCATCGTTGATGGATTTGATTTT
TCTGATCAAATTTTGGACTCCACACTTGGTGCATATGATGGAAATGTTTATGAAAATTTA
TTTGCTGCTACCAAAAAGTCAACATTGAATGACGAAGAAGTCAACAAAAGTTTCCATTTG
TATTTGAAGCCATTTATGAAGGCAAATTTGTAA

>g15325.t1 Gene=g15325 Length=670
MPAISKDLQEEREKVNFNIEEFTNWFYGGIEKVEKKRSLEKLLLSDPDLNLSLDTSYLSY
KEQYEEAIRRSTITYRKVIDLLKKTGGNQIKAGAVLEVLRSCMIGCINKEGDPLMLQFTM
FLFMMFKLTNDEQKAEWLPKVLNCNILGTYAQTELGHGTNVRGLETTATYDPITKEFIIN
TPSLSAYKFWPGNMGHTVNYAVVLAQLYTKGQCYGIQPFIVPIRDLETHKPLPGITVGDI
GNKMGYMTMNNGYLAFNNVRIPFKNLLMRNAKMLEDGTFIKPKISVLNYGAMSSMRNSIL
NDTAMMMSRAATIATRYSLVRRQSPINPNDPEPKIIEHKTQQYKVFVPLAKAIIYRIVSS
YLDELFTQIQQESSSGNFDRLNELHALNCGLKAVMSEEGTKAIELCRLACGGHGYLKSAG
FDSIYRLCTAAQTGEGENTVMHLQTARYLMKTFTKARNGEKLTEGVAYLSEFINLNGRRL
IFDDSIRGILRAIQTAAASKIVIAWKHIEERKKNFTAEEAASYTGIELTRASELHCHTCL
LQIAIVEIEKAIGKVSRALGEVLRNVLELYAVDTILKLSGDVLLFVNMTAEDVEKLQKRL
ENSLQFFRSTAIGIVDGFDFSDQILDSTLGAYDGNVYENLFAATKKSTLNDEEVNKSFHL
YLKPFMKANL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g15325.t1 Gene3D G3DSA:1.10.540.10 - 18 147 0
10 g15325.t1 Gene3D G3DSA:2.40.110.10 - 148 285 0
12 g15325.t1 Gene3D G3DSA:1.20.140.10 - 287 460 0
11 g15325.t1 Gene3D G3DSA:1.20.140.10 - 485 619 0
4 g15325.t1 PANTHER PTHR10909:SF250 ACYL-COENZYME A OXIDASE 5 669 0
5 g15325.t1 PANTHER PTHR10909 ELECTRON TRANSPORT OXIDOREDUCTASE 5 669 0
13 g15325.t1 PIRSF PIRSF000168 Acyl-CoA_oxidase 1 670 0
1 g15325.t1 Pfam PF14749 Acyl-coenzyme A oxidase N-terminal 18 146 0
2 g15325.t1 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 150 259 0
3 g15325.t1 Pfam PF01756 Acyl-CoA oxidase 488 667 0
6 g15325.t1 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 107 271 0
7 g15325.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 288 470 0
8 g15325.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 485 667 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0005777 peroxisome CC
GO:0055114 NA NA
GO:0006635 fatty acid beta-oxidation BP
GO:0003997 acyl-CoA oxidase activity MF
GO:0006631 fatty acid metabolic process BP
GO:0071949 FAD binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed