Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-like elastase family member 2A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15370 g15370.t1 TSS g15370.t1 5141127 5141127
chr_4 g15370 g15370.t1 isoform g15370.t1 5141272 5144690
chr_4 g15370 g15370.t1 exon g15370.t1.exon1 5141272 5141500
chr_4 g15370 g15370.t1 cds g15370.t1.CDS1 5141272 5141500
chr_4 g15370 g15370.t1 exon g15370.t1.exon2 5141554 5142162
chr_4 g15370 g15370.t1 cds g15370.t1.CDS2 5141554 5142162
chr_4 g15370 g15370.t1 exon g15370.t1.exon3 5144063 5144470
chr_4 g15370 g15370.t1 cds g15370.t1.CDS3 5144063 5144470
chr_4 g15370 g15370.t1 exon g15370.t1.exon4 5144533 5144690
chr_4 g15370 g15370.t1 cds g15370.t1.CDS4 5144533 5144690
chr_4 g15370 g15370.t1 TTS g15370.t1 NA NA

Sequences

>g15370.t1 Gene=g15370 Length=1404
ATGCAGTTTTGTTTAATATTTTTTACAATTATAATTTTTAATCTATTACAAATCAAATGT
GTTAATGTTTGTGGTGTACAAAATATCGATATACGTTTTCATTCTTATAACTTAATTGTT
CAAGGTTACGAAAGTGTGCCTGGTGAATGGCCTTGGCATGTTGCATTATATAACTACCAC
GGATATAATTGTGGTGCATCTTTGATAAGCGAATGGAATTTACTTTCAGCCGCTCACTGT
TTTGGAGAATCTTCTGAGCAATTACAACTTGATGATTTTTATGCCATTCTTGGTCGTTTT
GATTTAAGAGATACAACTGAAACTCATTGGATTAAAAGACAATTTTCATCAATTACTATT
CATGAAGACTTTAAAATGAATGTTAGAACTAAAAAAAGTAATGGTGATATTGCAGTCATA
AAAATGTCACAAAAGGTTGAATTTACTGACAGAATAAGACCAATTTGCCTTCCTAATTCA
AATTCAAATGTTGATGGCCTTTTGGGAACTGTTGTTGGTTATGGAAATAGTGGCTCTAAT
AGACTTCATGAATTTACACCACAAAAAGGTCAAATTCGTACGATCAGTTACAGTCGATGT
CTTTCTAAAGATCCATTTTATAAAATTATTGTCTCTGAAAGAAGTTTCTGTGGTGGTGAG
ACAACAATTGCACCATGCCACGGTGATTCTGGTGGAGGTTTCTTTGTGAAAAATAGTCAA
ACCAATCAATTTACCCTTTATGGAATTGTATCACAAGGTGCTAAATCAAAAGAATGCAGT
CCAAATGATTATGTAGTCTTTGTTGATGTTTCAAAATTTATTAATTGGATTCTAAATGCA
ATAACAACTTCTGGTAATATTATTTCAAGAGGCAAATGTTTGTCAGCAAATCAACAGATA
ACTTCCAATAATGGTTGTTTTGTTTTTATTTTTCAAACTGATGGTAATGCTGTCGTATAT
AGCATTACAAGCGCAACATCAAAAGTTCCAATATGGGCGACAGGAACCCATAGCAAGAAT
CCAAATGCTGATCGTATTTGTTTGCAGTCTAATGGTGATTTGGTTGCATATAGTGGCACA
AAAGCCTATTTTGCAAGTAACACAGCTGGAACTTCTGGTAGAAATGTTGTAATGCAAGAT
GATGGAAATTTAGTTATGTATGGTGAAAACAATAAAGTTATTTGGGCAACAAATACAGTT
CAACAAACTCTCACATGTCCTTTTTTATCTACAACAAAAACTTCTGGATGTGCTAACGGT
GGAAAATTACCTTATTGTTGTGCCAATGGATCAACTTCACCATATTGTTGTGAAAACAAT
TCGCCATCTCCTCACTGTTGTGCTAATGGCTCAATGTCTCCTCATTGTTGTGCAAATGGA
TCTATGAATCGTGATTGTTCTTAA

>g15370.t1 Gene=g15370 Length=467
MQFCLIFFTIIIFNLLQIKCVNVCGVQNIDIRFHSYNLIVQGYESVPGEWPWHVALYNYH
GYNCGASLISEWNLLSAAHCFGESSEQLQLDDFYAILGRFDLRDTTETHWIKRQFSSITI
HEDFKMNVRTKKSNGDIAVIKMSQKVEFTDRIRPICLPNSNSNVDGLLGTVVGYGNSGSN
RLHEFTPQKGQIRTISYSRCLSKDPFYKIIVSERSFCGGETTIAPCHGDSGGGFFVKNSQ
TNQFTLYGIVSQGAKSKECSPNDYVVFVDVSKFINWILNAITTSGNIISRGKCLSANQQI
TSNNGCFVFIFQTDGNAVVYSITSATSKVPIWATGTHSKNPNADRICLQSNGDLVAYSGT
KAYFASNTAGTSGRNVVMQDDGNLVMYGENNKVIWATNTVQQTLTCPFLSTTKTSGCANG
GKLPYCCANGSTSPYCCENNSPSPHCCANGSMSPHCCANGSMNRDCS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
20 g15370.t1 CDD cd00190 Tryp_SPc 39 277 2.90602E-52
11 g15370.t1 Gene3D G3DSA:2.40.10.10 - 39 269 4.9E-54
12 g15370.t1 Gene3D G3DSA:2.40.10.10 - 51 277 4.9E-54
14 g15370.t1 Gene3D G3DSA:2.90.10.10 Agglutinin 279 342 2.5E-13
13 g15370.t1 Gene3D G3DSA:2.90.10.10 Agglutinin 343 415 1.5E-15
2 g15370.t1 PANTHER PTHR24260 - 6 285 1.3E-54
3 g15370.t1 PANTHER PTHR24260:SF110 GH19262P 6 285 1.3E-54
5 g15370.t1 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 65 80 4.5E-7
4 g15370.t1 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 132 146 4.5E-7
6 g15370.t1 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 223 235 4.5E-7
1 g15370.t1 Pfam PF00089 Trypsin 39 277 2.8E-43
16 g15370.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
17 g15370.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
18 g15370.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
19 g15370.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 18 -
15 g15370.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 467 -
23 g15370.t1 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 75 80 -
25 g15370.t1 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 39 282 24.586
24 g15370.t1 ProSiteProfiles PS50927 Bulb-type lectin domain profile. 285 399 13.208
21 g15370.t1 SMART SM00020 trypsin_2 38 277 5.5E-51
22 g15370.t1 SMART SM00108 blect_4 285 401 7.6E-12
9 g15370.t1 SUPERFAMILY SSF50494 Trypsin-like serine proteases 15 281 2.65E-61
7 g15370.t1 SUPERFAMILY SSF51110 alpha-D-mannose-specific plant lectins 295 360 1.78E-8
8 g15370.t1 SUPERFAMILY SSF51110 alpha-D-mannose-specific plant lectins 344 403 7.82E-15
10 g15370.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values