General information for g15372.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 313a1.
Parent gene
- The parent gene g15372 is located on chr_4: 5151227..5153010 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15372 | g15372.t1 | isoform | g15372.t1 | 5151227 | 5153010 |
| chr_4 | g15372 | g15372.t1 | exon | g15372.t1.exon1 | 5151227 | 5151747 |
| chr_4 | g15372 | g15372.t1 | cds | g15372.t1.CDS1 | 5151227 | 5151747 |
| chr_4 | g15372 | g15372.t1 | exon | g15372.t1.exon2 | 5152263 | 5152524 |
| chr_4 | g15372 | g15372.t1 | cds | g15372.t1.CDS2 | 5152263 | 5152524 |
| chr_4 | g15372 | g15372.t1 | exon | g15372.t1.exon3 | 5152642 | 5153010 |
| chr_4 | g15372 | g15372.t1 | cds | g15372.t1.CDS3 | 5152642 | 5153010 |
| chr_4 | g15372 | g15372.t1 | TSS | g15372.t1 | NA | NA |
| chr_4 | g15372 | g15372.t1 | TTS | g15372.t1 | NA | NA |
Sequences
>g15372.t1 Gene=g15372 Length=1152
ATGTGTAAAATTCCTGACATTAAAGATCAAATTCCACTTCTTGGAATTGCTCACAAATTT
CTCAATGTTGAGCTTAAAGATTACATAAAAATTATGTTTGAAGTTTTCGATGTGAATATT
CCAATACAAAAAACTTGGTTTGCTTTAAAATTGGCAATTGTTCCAAACACACCAGAACAA
TTTAAAACAATTTTTACTTCACCTTATTGTATCAATAAACCAACAGTAATTTATGATGGA
TTTTTCTCAAAATATGGAATTATTTCTACAAATGGTGAAGTGCAAGATAAACATAGAAAA
ATTCTTAGCAATTCAATGACTCCAACAATTCTTAATCAATTGAATCCAATTTTTAATGAA
AAGATTAAAAATTTTGTAAAAAAAATTAGCGAAAAAGTTGAAAAAAGTGAATTTAATATT
TATAATTATGTTGCTGCATGCACTTTAGAAGCATTAATGAAAGGACAATTTCAGCATGAC
CATGATTGTTATGGAAGTGAAGTTATTGAAGCTTTTGAAAATTCTAAAGAAATCATGATG
AGACGAATAGTGCAACCTTGGATGTCTTTTAAACCTTTTTTCAATATTTCAAAACTTGCT
AAAGATGCAAAAAAAGTGTTCAATCCAATACACAAGAAAGTCAATGAAATTATTAATGTA
AATCAACATTTAAAAATACATAAAGACCAAAAAGTTGGAGTTCTCATAAGTCAACTGTTG
AATTTTAAAAATGAATTTTCTGAAGAAGAAATTAGAGATGAAATTTTCATTTGGATATTT
GGTGGATATGAAACCACGGCTTTGACTTTATCTACCTGTCTTCTCATGTTAGCAATGCAC
AAAAAAGTTCAACAAAAAGTAATAGAAGAAATTGAAAATTCAAAGTTCGATGAACGTTTT
GACATCACAAATGAAGAAACTCAAAATTTTCCTTACATTGAATCAGTCCTAAAAGAAACA
ATGCGATTATTCCCAGTTGCACCAATAATTTTAAGAGAAACAACTGCTGAAATTGAACTT
GAAGGTCATAAAATTCCAAAAGACACAATTTTAGTTCTTCCAATTTATCTTGTCCAAAGA
AACAAAGATATTTGGGGTGATGATGCTGAAAATTTTAATCCAGAACGATTTGAAGATAAA
AAAAATCAATGA
>g15372.t1 Gene=g15372 Length=383
MCKIPDIKDQIPLLGIAHKFLNVELKDYIKIMFEVFDVNIPIQKTWFALKLAIVPNTPEQ
FKTIFTSPYCINKPTVIYDGFFSKYGIISTNGEVQDKHRKILSNSMTPTILNQLNPIFNE
KIKNFVKKISEKVEKSEFNIYNYVAACTLEALMKGQFQHDHDCYGSEVIEAFENSKEIMM
RRIVQPWMSFKPFFNISKLAKDAKKVFNPIHKKVNEIINVNQHLKIHKDQKVGVLISQLL
NFKNEFSEEEIRDEIFIWIFGGYETTALTLSTCLLMLAMHKKVQQKVIEEIENSKFDERF
DITNEETQNFPYIESVLKETMRLFPVAPIILRETTAEIELEGHKIPKDTILVLPIYLVQR
NKDIWGDDAENFNPERFEDKKNQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15372.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 2 | 383 | 3.9E-71 |
| 2 | g15372.t1 | PANTHER | PTHR24291:SF140 | CYTOCHROME P450 4C3-RELATED | 53 | 377 | 5.3E-54 |
| 3 | g15372.t1 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 53 | 377 | 5.3E-54 |
| 5 | g15372.t1 | PRINTS | PR00385 | P450 superfamily signature | 261 | 278 | 2.3E-5 |
| 4 | g15372.t1 | PRINTS | PR00385 | P450 superfamily signature | 315 | 326 | 2.3E-5 |
| 1 | g15372.t1 | Pfam | PF00067 | Cytochrome P450 | 32 | 382 | 2.5E-59 |
| 9 | g15372.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 254 | - |
| 10 | g15372.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 278 | - |
| 8 | g15372.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 279 | 383 | - |
| 6 | g15372.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 11 | 381 | 1.96E-68 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed