Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 4c21.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15373 g15373.t1 isoform g15373.t1 5153908 5156173
chr_4 g15373 g15373.t1 exon g15373.t1.exon1 5153908 5154512
chr_4 g15373 g15373.t1 cds g15373.t1.CDS1 5153908 5154512
chr_4 g15373 g15373.t1 exon g15373.t1.exon2 5155258 5155519
chr_4 g15373 g15373.t1 cds g15373.t1.CDS2 5155258 5155519
chr_4 g15373 g15373.t1 exon g15373.t1.exon3 5155589 5156173
chr_4 g15373 g15373.t1 cds g15373.t1.CDS3 5155589 5156173
chr_4 g15373 g15373.t1 TSS g15373.t1 NA NA
chr_4 g15373 g15373.t1 TTS g15373.t1 NA NA

Sequences

>g15373.t1 Gene=g15373 Length=1452
ATGTCAATTGTTTTGATAGTTTTCCCATTAGTTATCATAATTGCTTTTGCAATTTTTCGA
TGGCGACGAAGAAGATTTTACGAGTTGGCGGGAAAAATTCCGAGAGTTGAAGGAACTTTT
TTTGGTGAATTGAGTTATCGATTTTTAGGTGTAAAAACAGAAAATATTACAAAATTATTA
TATGAAGTGATGGGTGCTGATACACCAATAACTAGTGCTTATTTTCTAACTGAATTTATG
GTGCTTGCAAATACACCAGAAATGTTCAAGACAATTTTATCATCACCACATTGTCTTAAA
AAACCAACAATAATTTATGATGGATTTTTCGCTAAAAATGGAATTCTTGCAAATAATGGA
AGCATGCAAGAAAAACATAGAAAAATTTTAAGCAATTCTTTCACTCCAGCACTTTTAAAT
CAACATAATTCATTGTTTAATGAAAAAGTGAAAAAGTTTGTGAGAAAAGTTGGTGAAAAA
GCTGGAAAAGGTGAATTTGATATTTACAATCATGTTGCTGCATGCTCATTGGAAATTTTA
ATGAAAGGAAATTTCTTTGACAATGAAGATTGCTATGATAGCAATGTGATTCATTCTTTT
AATAACACAACAATTTTAATGGCAGCAAGAATGATGAGACCATGGATGTCAATTGATTTT
TTAGCCAAGTTAACAAGTTTGTCAAAAACAATAAAAATTGGTTTACAACCAGTTGAAAAT
AAAATTAAAGAAATTTTAAAAATCAATGAACATTTAAAAGTCGAAAGTGACCAAAAACAA
GGAGTTTTTATTTCACAATTACTGAACAAAAAATATGACCTAAGTGATGAAGAAATTAGA
GATGAAATTTTCTTATTAATTTTTGGAGGATATGAAACCACGGCTTTAACTTTATCAGTT
TGCCTTCTCATGTTAGCAATGCATAAAGAAGCTCAACAAAAAGTAATAGAAGAAATTGAA
AATTCAAATTTCGATGAAAATTTTGACATCACAAATGAAGAAACTCAAAATTTTCCTTAT
ATTGAATCAGTTCTTAAAGAAACAATGAGGTTATTCCCAGTCGCACCATTATTTTTTAGA
GAAACAACAGCTGAAATTGAACTTGACGGTTATACGATACCAACTGGTGCAATGGTTGCA
CTTCCAATTTATTTTGTACATAGAAGAGAATCAATTTGGGGCAGTGATGCAAGTAAATTT
ATCCCTGAAAGATTTGAAAGTGAAAAGGTTAAAAATTTACATTCACATGCATTTGTTCCA
TTTTCTGGTGGCAAAAGAATGTGTTTAGGCTACAAATATGCAATGTATCAGATGAAAATT
ACTATTGTAAATTTTTTTAAGAAATTTGAAGTTGAAACGAGTTTAAAATATGATGAAATA
GAAATGCAAATGGTGCCAACATTGCACATTGTTAATGGATATAAAATGAAAGTTAATGAA
AGAAAAAGTTGA

>g15373.t1 Gene=g15373 Length=483
MSIVLIVFPLVIIIAFAIFRWRRRRFYELAGKIPRVEGTFFGELSYRFLGVKTENITKLL
YEVMGADTPITSAYFLTEFMVLANTPEMFKTILSSPHCLKKPTIIYDGFFAKNGILANNG
SMQEKHRKILSNSFTPALLNQHNSLFNEKVKKFVRKVGEKAGKGEFDIYNHVAACSLEIL
MKGNFFDNEDCYDSNVIHSFNNTTILMAARMMRPWMSIDFLAKLTSLSKTIKIGLQPVEN
KIKEILKINEHLKVESDQKQGVFISQLLNKKYDLSDEEIRDEIFLLIFGGYETTALTLSV
CLLMLAMHKEAQQKVIEEIENSNFDENFDITNEETQNFPYIESVLKETMRLFPVAPLFFR
ETTAEIELDGYTIPTGAMVALPIYFVHRRESIWGSDASKFIPERFESEKVKNLHSHAFVP
FSGGKRMCLGYKYAMYQMKITIVNFFKKFEVETSLKYDEIEMQMVPTLHIVNGYKMKVNE
RKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g15373.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 29 483 2.9E-92
2 g15373.t1 PANTHER PTHR24291:SF140 CYTOCHROME P450 4C3-RELATED 4 481 8.9E-74
3 g15373.t1 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 4 481 8.9E-74
4 g15373.t1 PRINTS PR00463 E-class P450 group I signature 278 295 1.0E-12
11 g15373.t1 PRINTS PR00385 P450 superfamily signature 289 306 4.9E-12
7 g15373.t1 PRINTS PR00463 E-class P450 group I signature 298 324 1.0E-12
8 g15373.t1 PRINTS PR00463 E-class P450 group I signature 342 360 1.0E-12
10 g15373.t1 PRINTS PR00385 P450 superfamily signature 343 354 4.9E-12
6 g15373.t1 PRINTS PR00463 E-class P450 group I signature 418 428 1.0E-12
12 g15373.t1 PRINTS PR00385 P450 superfamily signature 419 428 4.9E-12
5 g15373.t1 PRINTS PR00463 E-class P450 group I signature 428 451 1.0E-12
9 g15373.t1 PRINTS PR00385 P450 superfamily signature 428 439 4.9E-12
1 g15373.t1 Pfam PF00067 Cytochrome P450 53 454 9.3E-75
17 g15373.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
18 g15373.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
19 g15373.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
21 g15373.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 17 -
16 g15373.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 282 -
20 g15373.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 283 306 -
15 g15373.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 307 483 -
23 g15373.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 421 430 -
13 g15373.t1 SUPERFAMILY SSF48264 Cytochrome P450 51 481 6.55E-89
22 g15373.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed