General information for g15384.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 20.
Parent gene
- The parent gene g15384 is located on chr_4: 5181262..5183855 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15384 | g15384.t1 | isoform | g15384.t1 | 5181262 | 5183855 |
| chr_4 | g15384 | g15384.t1 | exon | g15384.t1.exon1 | 5181262 | 5181484 |
| chr_4 | g15384 | g15384.t1 | cds | g15384.t1.CDS1 | 5181262 | 5181484 |
| chr_4 | g15384 | g15384.t1 | exon | g15384.t1.exon2 | 5181671 | 5182537 |
| chr_4 | g15384 | g15384.t1 | cds | g15384.t1.CDS2 | 5181671 | 5182537 |
| chr_4 | g15384 | g15384.t1 | exon | g15384.t1.exon3 | 5182910 | 5183683 |
| chr_4 | g15384 | g15384.t1 | cds | g15384.t1.CDS3 | 5182910 | 5183683 |
| chr_4 | g15384 | g15384.t1 | exon | g15384.t1.exon4 | 5183740 | 5183855 |
| chr_4 | g15384 | g15384.t1 | cds | g15384.t1.CDS4 | 5183740 | 5183855 |
| chr_4 | g15384 | g15384.t1 | TSS | g15384.t1 | NA | NA |
| chr_4 | g15384 | g15384.t1 | TTS | g15384.t1 | NA | NA |
Sequences
>g15384.t1 Gene=g15384 Length=1980
ATGAGTTGTGTGACTATGAGAAATGTTTTAAAAATTATTAAAAATAAAAATGATTCCGAG
AATAAAAATCAAATTATTTTCAATGGATTAAATTTAACAATTAAATGTGGAACAATTTAC
ATTTTAATTGGTTCATCAGGATGTGGTAAAACAACTTTACTTACTTGCTTACTTGGTATG
CAAAAAATTCAAAAAGGTGAAATAAAAATTTTCAATCATAAAGTTGAGTTTGAGCAAATT
TCAAGATTTTCAAAAATAATTGGTTACATGCCACAACAGATTTCGTTAACTTCAGAATTA
ACAATTTATGAAACTTTAAAATATTTTGCAAATCTTCATTCAATGAATCATGAGACTTTT
TGTGATCGTTTAGAATTAATTTCTGATTTATTAGAACTTCCACAATGTAATACAATGGTA
AAAGCTTTATCAGGTGGTGAACAGAGAAGAATTTCATTAGCTGTTGCAATTATACATAAT
TCAAAGTTGCTGATTTTAGATGAACCAACTGTTGGTGTTGATTTTCTTTTACGTGAAAAA
ATTTGGAACTTTCTGCAAAAACAAACTGTTGAAAATAATTTGACAGTTTTGACAACGACG
CATTATTTAAATGAATCTATTCGAGCAAATTGTTGTGGGTTTTTAAGAAATGGTAATTTA
ATAGCTGAAGGATCAGCAACAGAAATTATAGAATTATTAGAAGTTTCAACACTTGATAAA
GCTTTTTTAAAATTATGTGAAAGTGAAAGAACTTTTGGTAAAATTGAAAATCATGCAGAA
GAGAATGAAAAAGAAAAAATTGAAACAGAAGAAGATAAAAGATGGTTCAGAAAAAGAGTT
ATTAAAGGATTAATGATCAAAGAATTGCATAGAATGAAAAGGCAACCAATGAATTTTCTC
ATAACATTTTGTTATGTCAGTCTGCTCCTAATTATGATTCAATTAATCATGGGCCGACTT
CCTAATGATTTAAAAATTGGAATTTTTAATAACCAAAATCAAAATTTTGATCGTTACAAT
TCACAACGATTTTTGGACTTTTTAACTGAGTTTGATGTGATTACTTATAATTCTTTTTCT
GAAGCATTCCAAAGTTTTAGAAAATTAGAAATATTTGGTCTCATTAATATTTTACCAAAT
TTTACTCAAAATATCATCAACAGTGAAAATATGACAGATAACAAATTGATGGAGTTGTAC
ATTGAAAGTTCTTTATTTCCATTACATGACATTGCAAAAATAAAAATACTCAAAGCCTTA
AGTAATTTTTTATCAAATATTTCGGAAGAGTGTGATGTCAAAAGTCACTTGCTCTTTTCA
CCAATGAAAGTTGAAATACTTTTTGCTCCTCTATCGTTGGATTCTTCGATTTCAAAGACA
CTTTCAATGGTTCCATTTTTACCATTTTGTGTTACAATAATTTTTTCAATTAATCTCATC
AGTCAAAGCCGATATGAAGGAATTTGGAATCGATCATTGCTATGTGGAGTGAGAATTTAT
GAAATTATTTCAATTTATATTATTGAATGTTTTTGCATTTCAATTTTGCTGCTTTTAGAA
ATTTTAATAACATTAAAATATTTACAAGTTAATATTGAGGAACATTTTTGGATTGTTTGT
TTTGTAATCTTTGAAGTTTCACAAATTGGATTTTTTCTTGGTTTTTTTATATCAATTTTG
ACTGATGATGCTTTAATATCAGGACTTTTCTTTGGAGGAATTTTATGTTCTGGAGTTATT
TCATCTGGTGGAAATTGGTCATTAAATACAATAACTGATGCCATTTTAACAATAATTTTT
ACACCACCTGTAACAATTCCTGGAAAATATTTCAATGATTTGGCATACAGAGGTGGTGAT
ATTAACAAAAAAGTCATGATTATTGCAATAACTTCAATTTTTACATGGAAAATTTTTATA
ATCATTGGAATTTATTTTGCTCTAAAATATAAAAAGTTTTCAAATGTTGATGTGAAATAA
>g15384.t1 Gene=g15384 Length=659
MSCVTMRNVLKIIKNKNDSENKNQIIFNGLNLTIKCGTIYILIGSSGCGKTTLLTCLLGM
QKIQKGEIKIFNHKVEFEQISRFSKIIGYMPQQISLTSELTIYETLKYFANLHSMNHETF
CDRLELISDLLELPQCNTMVKALSGGEQRRISLAVAIIHNSKLLILDEPTVGVDFLLREK
IWNFLQKQTVENNLTVLTTTHYLNESIRANCCGFLRNGNLIAEGSATEIIELLEVSTLDK
AFLKLCESERTFGKIENHAEENEKEKIETEEDKRWFRKRVIKGLMIKELHRMKRQPMNFL
ITFCYVSLLLIMIQLIMGRLPNDLKIGIFNNQNQNFDRYNSQRFLDFLTEFDVITYNSFS
EAFQSFRKLEIFGLINILPNFTQNIINSENMTDNKLMELYIESSLFPLHDIAKIKILKAL
SNFLSNISEECDVKSHLLFSPMKVEILFAPLSLDSSISKTLSMVPFLPFCVTIIFSINLI
SQSRYEGIWNRSLLCGVRIYEIISIYIIECFCISILLLLEILITLKYLQVNIEEHFWIVC
FVIFEVSQIGFFLGFFISILTDDALISGLFFGGILCSGVISSGGNWSLNTITDAILTIIF
TPPVTIPGKYFNDLAYRGGDINKKVMIIAITSIFTWKIFIIIGIYFALKYKKFSNVDVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15384.t1 | Gene3D | G3DSA:3.40.50.300 | - | 4 | 290 | 1.2E-52 |
| 3 | g15384.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 2 | 249 | 4.9E-90 |
| 5 | g15384.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 2 | 249 | 4.9E-90 |
| 4 | g15384.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 264 | 651 | 4.9E-90 |
| 6 | g15384.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 264 | 651 | 4.9E-90 |
| 2 | g15384.t1 | Pfam | PF00005 | ABC transporter | 28 | 170 | 8.6E-30 |
| 1 | g15384.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 299 | 640 | 2.8E-8 |
| 10 | g15384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 296 | - |
| 22 | g15384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 317 | - |
| 15 | g15384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 318 | 460 | - |
| 21 | g15384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 461 | 481 | - |
| 12 | g15384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 482 | 501 | - |
| 18 | g15384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 502 | 523 | - |
| 16 | g15384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 524 | 534 | - |
| 23 | g15384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 535 | 557 | - |
| 9 | g15384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 558 | 563 | - |
| 17 | g15384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 564 | 580 | - |
| 14 | g15384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 581 | 585 | - |
| 20 | g15384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 586 | 604 | - |
| 11 | g15384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 605 | 624 | - |
| 19 | g15384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 625 | 648 | - |
| 13 | g15384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 649 | 659 | - |
| 31 | g15384.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 143 | 157 | - |
| 33 | g15384.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 4 | 242 | 18.521 |
| 32 | g15384.t1 | SMART | SM00382 | AAA_5 | 36 | 236 | 1.3E-8 |
| 7 | g15384.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 230 | 1.7E-48 |
| 27 | g15384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 318 | - |
| 26 | g15384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 460 | 482 | - |
| 28 | g15384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 503 | 525 | - |
| 29 | g15384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 535 | 557 | - |
| 25 | g15384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 564 | 586 | - |
| 24 | g15384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 590 | 612 | - |
| 30 | g15384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 625 | 647 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed