General information for g15412.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GPI ethanolamine phosphate transferase 2.
Parent gene
- The parent gene g15412 is located on chr_4: 5365094..5366209 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15412 | g15412.t1 | TTS | g15412.t1 | 5362920 | 5362920 |
| chr_4 | g15412 | g15412.t1 | isoform | g15412.t1 | 5362966 | 5366209 |
| chr_4 | g15412 | g15412.t1 | exon | g15412.t1.exon1 | 5362966 | 5363182 |
| chr_4 | g15412 | g15412.t1 | cds | g15412.t1.CDS1 | 5362966 | 5363182 |
| chr_4 | g15412 | g15412.t1 | exon | g15412.t1.exon2 | 5363510 | 5363673 |
| chr_4 | g15412 | g15412.t1 | cds | g15412.t1.CDS2 | 5363510 | 5363673 |
| chr_4 | g15412 | g15412.t1 | exon | g15412.t1.exon3 | 5363820 | 5365000 |
| chr_4 | g15412 | g15412.t1 | cds | g15412.t1.CDS3 | 5363820 | 5365000 |
| chr_4 | g15412 | g15412.t1 | exon | g15412.t1.exon4 | 5365094 | 5365807 |
| chr_4 | g15412 | g15412.t1 | cds | g15412.t1.CDS4 | 5365094 | 5365807 |
| chr_4 | g15412 | g15412.t1 | exon | g15412.t1.exon5 | 5365882 | 5366209 |
| chr_4 | g15412 | g15412.t1 | cds | g15412.t1.CDS5 | 5365882 | 5366209 |
| chr_4 | g15412 | g15412.t1 | TSS | g15412.t1 | 5366967 | 5366967 |
Sequences
>g15412.t1 Gene=g15412 Length=2604
ATGACAATAAAAAGTGAAAATTTCTATTTAGTTCTACTAACGGCAAGTGTCATTTCATCA
TTCTTTTTTTGTATTGGATTCTTTCCTTATTCGAATGTTAAAAAATTAAAATCAGAACTT
AGCAATAATGAATTGGAAAAGTTGAATTTACCAAAAATTAATCGATCAATTTTAATGCTG
ATTGATGCACTTCGACTAGACTTGATAAGTGATAGAAATAATTTTCCATTTGTGCATGAA
GTACTCAATAAAGGTGATGGATGTATGCTACAAATGAAGGTTAATCTCCCGACTGTTACT
AAACCAAGAATTACCGCAATGACATCAGGAACTGTTCCGTCATTTCTTGATGTAGCTAAA
AATTTTGCTAAAAATAAAATAAAAATTGACACTTTTCTTCATCAAATGAATGCAAGAAAT
CAAAAAATTGTCTTTGCCGGTGATGATACTTGGTTAATGTTTCCATTCTTTACTCGTCAC
TATGCAAATCGTGATTCACTTTTTGTCAATGATTTTTATGAAGGTGATTTAAATATTACA
AGATCTCTAGCTTATGAATTAAAACAAAATGATTGGAAATTGTTGATTCTTCATTATTTG
GGACTTGATCACATTGGACACGTCTTTAATCCTTTTCATGAATTAATTCAACCTAAATTG
CAAGAAATGGATCAAGTAATAAAAACGATTGTTGAAAAATTATCAGAATGGAATTCAAAA
AGTAAAGAAAAGTCAATTTTGATACTCACAAGTGACCATGGAATGAGAAATGCTGGAGGA
CATTCAGGAAGTTCTATCGCTGAAACTCACATTCCATTGTTAATTTTGGGTCACAATTGC
ACATCAAATGATAAAGAATTTTACAATCAAATTGATTTAGCAACGACTTTTTCAATCATG
AATGGACTACAAATTCCTGAGTCATCAATTGGTGCTGTGATTCCTGAATTATTATTTAAT
ATGGAACCTATTAAGCAATTGAATGTTGTGAAAATTATTAATGAAAGATTATTGAAAATG
ATTGAACATGACAAGAGTGAAGAATTTGTTCTTAAACACAAAAAAGCATCATCATATTTC
GAAATTTACACCAAAGATACCAAAAACAAAAATGCCTTTGAAACATCATTTAAACTTTTC
ATGGAATCATCAAAAGAAATTTCTGAAATACTCGCACAGCAATCATTAGACGTCAATCTT
TTTTATGTTCTTCTTGGTCTATTTATGAATATTTTCATCGCCATCACAATCATTCTTCCA
TCAGATCTCTTTAAAGTTAAAGATTTAAAAATTGACTACAAAAAATTCATTCCAGTCATT
GCAGTTTTGATTGCTCTAAAATTTTTAATTTTTAATGAAATTTTCAATCAGACAAATGAT
TTGAAATCTTTCATTGTTGTGATCATCATGGGAATTCTTTTAAGATTAGTTGGTGATATT
TTCATTCTTAAACTGGATCGCTACAAATTGCATCTTTTTGACAATGATATTCTCTACTTA
CTTCTTATTGGTCACATATTTTTCACAATTTCTGTTGCTAGCAGTTCATTTATAGAAGAA
GAGCATCAAATTTGGTATTATTTATGCAATGCAATGTTTATTTTGCTGACATTTTATGAA
TTTCGAGGTAGAAAAAGTTTGGAATCTTTTATGAATGTCATTGCACAATGTATTCCAGTG
CTTTTAATTCACATTTTTATTCGAAGAATGAATCAAACTGGAGACAAATGGATTAATGTT
CCAGACATTGGTGATTGGCTGCACAAAAATGAAAATGAAGATTGGTTAAATTTACTGATT
GTTGTCAGTATTTTTCTATCATTAAGCTGGCTTGCAGTTAAACATGTTCATGGAATTGTG
CTTTTACCTTTTGTGATTCTTGCACATGTTGCTTTGTACTTGCATCATACGCGATCATTG
GTGACTGAAAGAATTGACATTTCGAATACAACATTATTTTGGATAAGCATAGCTCTCATC
ATTTCTATCACAGTTATTCAAAGATTGCAACAAAAAATGCAAAACAGCAATTTCTTTCTT
ATTTTTGTTTTGATCTCAATGTTGCTGCATCAACCACAAAATATTGGATTATGTTTTTGT
ATTGGAATTACAAGTATGCTAATTAACCATGCTGTTCATCGAATGATTAAAAATACACAT
GAAAAAATTATTGCAAAAATTTTCATGCATTGGTGGATTGGAAAAATGTTTTATTTTTAT
CAGGGAAACTCGAATAGTTTATCAACAATAGACACAAATGCTGGCTTTGTAGGTCAATCA
CATGTTCATTTGCCAATAATTTTCATTTTTTCAACAATTAATACTTTTAATGGACAAATT
ATGTCAATTATTTTGCTAGTTATTAGCCTAATTGAGGATTCTAAAAGACTGATGTTAGAT
TCAAAAACTGTAACACTACTTCTAACAAAATGGATATCATTCCTAACCATCATTCCATCG
ACATCATTTCTAGTCATAATCACATTATTGAGGCATCATCTTTTTATCTGGTCCGTTTTC
TCACCGAAACTACTTTATGATTTTTGCACAAATTTTCTTGTTTTAATTGCAATGCTAATT
GTAAAATTCATGATCAAATATTGA
>g15412.t1 Gene=g15412 Length=867
MTIKSENFYLVLLTASVISSFFFCIGFFPYSNVKKLKSELSNNELEKLNLPKINRSILML
IDALRLDLISDRNNFPFVHEVLNKGDGCMLQMKVNLPTVTKPRITAMTSGTVPSFLDVAK
NFAKNKIKIDTFLHQMNARNQKIVFAGDDTWLMFPFFTRHYANRDSLFVNDFYEGDLNIT
RSLAYELKQNDWKLLILHYLGLDHIGHVFNPFHELIQPKLQEMDQVIKTIVEKLSEWNSK
SKEKSILILTSDHGMRNAGGHSGSSIAETHIPLLILGHNCTSNDKEFYNQIDLATTFSIM
NGLQIPESSIGAVIPELLFNMEPIKQLNVVKIINERLLKMIEHDKSEEFVLKHKKASSYF
EIYTKDTKNKNAFETSFKLFMESSKEISEILAQQSLDVNLFYVLLGLFMNIFIAITIILP
SDLFKVKDLKIDYKKFIPVIAVLIALKFLIFNEIFNQTNDLKSFIVVIIMGILLRLVGDI
FILKLDRYKLHLFDNDILYLLLIGHIFFTISVASSSFIEEEHQIWYYLCNAMFILLTFYE
FRGRKSLESFMNVIAQCIPVLLIHIFIRRMNQTGDKWINVPDIGDWLHKNENEDWLNLLI
VVSIFLSLSWLAVKHVHGIVLLPFVILAHVALYLHHTRSLVTERIDISNTTLFWISIALI
ISITVIQRLQQKMQNSNFFLIFVLISMLLHQPQNIGLCFCIGITSMLINHAVHRMIKNTH
EKIIAKIFMHWWIGKMFYFYQGNSNSLSTIDTNAGFVGQSHVHLPIIFIFSTINTFNGQI
MSIILLVISLIEDSKRLMLDSKTVTLLLTKWISFLTIIPSTSFLVIITLLRHHLFIWSVF
SPKLLYDFCTNFLVLIAMLIVKFMIKY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 19 | g15412.t1 | Gene3D | G3DSA:3.40.720.10 | Alkaline Phosphatase | 54 | 318 | 9.8E-39 |
| 2 | g15412.t1 | PANTHER | PTHR23072 | PHOSPHATIDYLINOSITOL GLYCAN-RELATED | 9 | 867 | 1.1E-160 |
| 1 | g15412.t1 | Pfam | PF01663 | Type I phosphodiesterase / nucleotide pyrophosphatase | 183 | 257 | 7.3E-7 |
| 23 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 37 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 30 | - |
| 29 | g15412.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 31 | 399 | - |
| 47 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 400 | 424 | - |
| 20 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 425 | 435 | - |
| 41 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 436 | 455 | - |
| 32 | g15412.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 456 | 460 | - |
| 40 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 461 | 485 | - |
| 24 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 486 | 496 | - |
| 45 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 497 | 518 | - |
| 34 | g15412.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 519 | 523 | - |
| 46 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 524 | 541 | - |
| 25 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 542 | 549 | - |
| 44 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 550 | 567 | - |
| 28 | g15412.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 568 | 594 | - |
| 42 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 595 | 613 | - |
| 22 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 614 | 617 | - |
| 36 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 618 | 635 | - |
| 31 | g15412.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 636 | 646 | - |
| 38 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 647 | 666 | - |
| 21 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 667 | 677 | - |
| 39 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 678 | 708 | - |
| 30 | g15412.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 709 | 765 | - |
| 35 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 766 | 791 | - |
| 26 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 792 | 810 | - |
| 43 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 811 | 832 | - |
| 33 | g15412.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 833 | 843 | - |
| 48 | g15412.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 844 | 865 | - |
| 27 | g15412.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 866 | 867 | - |
| 18 | g15412.t1 | SUPERFAMILY | SSF53649 | Alkaline phosphatase-like | 55 | 314 | 1.36E-33 |
| 17 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 12 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 399 | 421 | - |
| 10 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 436 | 455 | - |
| 13 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 464 | 483 | - |
| 14 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 498 | 517 | - |
| 16 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 524 | 541 | - |
| 15 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 551 | 568 | - |
| 8 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 595 | 612 | - |
| 9 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 616 | 634 | - |
| 6 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 647 | 666 | - |
| 7 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 681 | 703 | - |
| 5 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 723 | 740 | - |
| 3 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 766 | 788 | - |
| 4 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 807 | 829 | - |
| 11 | g15412.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 844 | 861 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | BP |
| GO:0051377 | mannose-ethanolamine phosphotransferase activity | MF |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05310 (ethanolamine phosphate transferase 2 subunit G [EC:2.7.-.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
