General information for g15422.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15422 is located on chr_4: 5406718..5408570 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15422 | g15422.t2 | isoform | g15422.t2 | 5406196 | 5407393 |
| chr_4 | g15422 | g15422.t2 | exon | g15422.t2.exon1 | 5406196 | 5406358 |
| chr_4 | g15422 | g15422.t2 | TSS | g15422.t2 | 5406214 | 5406214 |
| chr_4 | g15422 | g15422.t2 | exon | g15422.t2.exon2 | 5406712 | 5406867 |
| chr_4 | g15422 | g15422.t2 | cds | g15422.t2.CDS1 | 5406718 | 5406867 |
| chr_4 | g15422 | g15422.t2 | exon | g15422.t2.exon3 | 5407177 | 5407393 |
| chr_4 | g15422 | g15422.t2 | cds | g15422.t2.CDS2 | 5407177 | 5407392 |
| chr_4 | g15422 | g15422.t2 | TTS | g15422.t2 | NA | NA |
Sequences
>g15422.t2 Gene=g15422 Length=536
AAAGTTTCTCATCAAATCGCTTCTGTTTTAATATTTTTTAAGAAACAAAACAAGTTTTTT
CTTTGATTCTTTTATGAATCATAATTTCGTTTGGTTGTTAGAAAAGCCAGAATCATTTAA
ACTGTTGTTTCTCTAAGATTAAACGAGTGATTTTTGAAAATTGCATCAAATGACAACCTC
AACTGCACAACAAGTAGACCATATAGATTTGACAAAATTACCAGTACATGAAAAGACAAA
ATTATGTGCAATCCTGGATCAAAATGAAACATGGGCTGAACTAGGAAAGCTAATGATGTT
TAATGCTTTTGAAATCATGGAAATGCAAACCGAAGCTGATCGCAAACGAAAATCTCCTTC
GGAAGTTCTCATCACAAAATGGTCACGTCATGGTCACATTGTCACAGAACTTTTCAAATT
ACTCTCAATTATGCAACATTATCAAGCAATGGAAGCAATCAAACATTCAGTTCCATCAGC
ATATCATATTTGGATCAAACCAGTGCAACCTCACATTAGCCGACTTATAAATGGTC
>g15422.t2 Gene=g15422 Length=122
MTTSTAQQVDHIDLTKLPVHEKTKLCAILDQNETWAELGKLMMFNAFEIMEMQTEADRKR
KSPSEVLITKWSRHGHIVTELFKLLSIMQHYQAMEAIKHSVPSAYHIWIKPVQPHISRLI
NG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15422.t2 | Gene3D | G3DSA:1.10.533.10 | Death Domain | 5 | 109 | 0 |
| 2 | g15422.t2 | PANTHER | PTHR24419:SF33 | SERINE/THREONINE-PROTEIN KINASE PELLE | 14 | 111 | 0 |
| 3 | g15422.t2 | PANTHER | PTHR24419 | INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE | 14 | 111 | 0 |
| 1 | g15422.t2 | Pfam | PF00531 | Death domain | 24 | 100 | 0 |
| 4 | g15422.t2 | SUPERFAMILY | SSF47986 | DEATH domain | 10 | 115 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
