General information for g15426.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g15426 is located on chr_4: 5417659..5420337 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15426 | g15426.t1 | isoform | g15426.t1 | 5417659 | 5420337 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon1 | 5417659 | 5417685 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS1 | 5417659 | 5417685 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon2 | 5417739 | 5417873 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS2 | 5417739 | 5417873 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon3 | 5418429 | 5418546 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS3 | 5418429 | 5418546 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon4 | 5418601 | 5418749 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS4 | 5418601 | 5418749 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon5 | 5418819 | 5418981 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS5 | 5418819 | 5418981 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon6 | 5419544 | 5419676 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS6 | 5419544 | 5419676 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon7 | 5419936 | 5420145 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS7 | 5419936 | 5420145 |
| chr_4 | g15426 | g15426.t1 | exon | g15426.t1.exon8 | 5420196 | 5420337 |
| chr_4 | g15426 | g15426.t1 | cds | g15426.t1.CDS8 | 5420196 | 5420337 |
| chr_4 | g15426 | g15426.t1 | TSS | g15426.t1 | NA | NA |
| chr_4 | g15426 | g15426.t1 | TTS | g15426.t1 | NA | NA |
Sequences
>g15426.t1 Gene=g15426 Length=1077
ATGGCAAGAAAAACGAAAAAACTTGATGCCTATGTTCATGTTTCAACGTGTTATGCAAAT
TGGTTCATTTACAATATGGAAGAAATTTTTTACGAGCCAAAATATGATCCAAATGAAGTT
TTAGAAATGTGTCGGACATTGAATAATGAAGAATTGAGGAAGAAAATTCCAACATTGAGT
CCTCATTTAAACACTTATACATTTACAAAGTCACTTTCTGAATATTTAATATCAAAGGAA
GGTCTTGATTTACCGATTGCAATCGTTCGACCATCAATTGCAGTAACATCAAGTCTAAAA
GAACCATTTCCTGGATGGATTGATAATTGGGGCGGTACAACACCTCATGTATATATGGCA
GCAAAAGGACTCGTAAGAAATCTTCAAATGAGAAAAGATGTCATTTGCGATGCAATTCCT
GCTGATTTTGTTATTAATATGATTTTAGCAACAGGTTGGAAAATTGGTACAGACAAAAAT
TCTAAGAATTCTCTTCCAATAATTTACAATTGCTCAACAAGTTCGATCAACCCAATTTTA
TTCAAGGACTTTTATCTTGGATGCACTGAAAACGGGAAGAAATATCCACACAGTGATGTT
TTATGGTATCCAAAACTTATAATGCGGAATTCAGTTTTATCTGAAAATTTATCAGTTTTA
ATTTACCAAAAAATACCATCTTATATTGGAGATTTTGTATTGAGGATTTCTGGAAAGAAA
CCAAGATTTGTCCTTAACACTCAACTCGTTTTCCAAAGTAAAAATCCAACAAAACTTGCA
AATTCAATGAATCATAAAGATTTGAAAGAATTTGATTTTAATGTGAAAAAAATTGATTGG
AAAAAATATATTGACATTTATCACCTTGGAATGAGAAAATATTTGGGAAAAGATAACTCA
GAAAATTTTGATGAATTGAGAAGAAAAGTTGAAAGATTGAAATATGCAAGATACTTGATG
ACAGGATCATTACTAATTGGATCATTTTTCTTCCTTCATTCAAATCAAAATTCAATTGAA
AACGCAAAGTATCCAAACATGATTAAAAAAGAAATAGAGCAAAAACATTTTTTATAA
>g15426.t1 Gene=g15426 Length=358
MARKTKKLDAYVHVSTCYANWFIYNMEEIFYEPKYDPNEVLEMCRTLNNEELRKKIPTLS
PHLNTYTFTKSLSEYLISKEGLDLPIAIVRPSIAVTSSLKEPFPGWIDNWGGTTPHVYMA
AKGLVRNLQMRKDVICDAIPADFVINMILATGWKIGTDKNSKNSLPIIYNCSTSSINPIL
FKDFYLGCTENGKKYPHSDVLWYPKLIMRNSVLSENLSVLIYQKIPSYIGDFVLRISGKK
PRFVLNTQLVFQSKNPTKLANSMNHKDLKEFDFNVKKIDWKKYIDIYHLGMRKYLGKDNS
ENFDELRRKVERLKYARYLMTGSLLIGSFFFLHSNQNSIENAKYPNMIKKEIEQKHFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g15426.t1 | CDD | cd09071 | FAR_C | 221 | 295 | 1.5884E-17 |
| 5 | g15426.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 212 | 9.4E-19 |
| 3 | g15426.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 1 | 332 | 3.1E-78 |
| 4 | g15426.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 1 | 332 | 3.1E-78 |
| 1 | g15426.t1 | Pfam | PF07993 | Male sterility protein | 1 | 148 | 2.0E-22 |
| 2 | g15426.t1 | Pfam | PF03015 | Male sterility protein | 245 | 298 | 4.9E-12 |
| 6 | g15426.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 314 | - |
| 8 | g15426.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 315 | 333 | - |
| 7 | g15426.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 334 | 358 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed