General information for g15428.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g15428 is located on chr_4: 5421204..5423240 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15428 | g15428.t1 | TSS | g15428.t1 | 5421178 | 5421178 |
| chr_4 | g15428 | g15428.t1 | isoform | g15428.t1 | 5421204 | 5423240 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon1 | 5421204 | 5421638 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS1 | 5421204 | 5421638 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon2 | 5421691 | 5421825 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS2 | 5421691 | 5421825 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon3 | 5421915 | 5422032 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS3 | 5421915 | 5422032 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon4 | 5422196 | 5422341 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS4 | 5422196 | 5422341 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon5 | 5422396 | 5422558 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS5 | 5422396 | 5422558 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon6 | 5422673 | 5422805 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS6 | 5422673 | 5422805 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon7 | 5422861 | 5423118 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS7 | 5422861 | 5423118 |
| chr_4 | g15428 | g15428.t1 | exon | g15428.t1.exon8 | 5423168 | 5423240 |
| chr_4 | g15428 | g15428.t1 | cds | g15428.t1.CDS8 | 5423168 | 5423240 |
| chr_4 | g15428 | g15428.t1 | TTS | g15428.t1 | 5423288 | 5423288 |
Sequences
>g15428.t1 Gene=g15428 Length=1461
ATGTCTATTGCAGATTTTTATAGTGGAAAATGTGTGCTCATAACAGGTGCCACAGGTTTC
ATTGGCAAAATGATTGTGGAAAAACTTCTGAGGTCGTGCCCAGAAGTTGACAAAATTTTT
CTTCTTGCACGAGCTAAAAAGAACAAAACAGCTTCGGAAAGAGTTCAAGATATCACAAAT
GTGCCACTTTTCGATGTCATTCGTGAAAAAAACGCAGAATCATTCAAGAAAATTTGCCTT
ATTGAAGGCGATATTGCAAAAGAAAATTTGGGACTTTCAGAAGCTGATCAAGAATTATTT
TGTGATAAAATCAATATCATTATTCACTCTGCAGCAACATTAAGCTTTACAGAGCCATTA
AAAATTGCTGTTGCTACAAACTTGCAGTCAGTAAAAGAAATCATGAAACTAGGAAGAAAA
ACAAAAAATCTTGAAGCGTTCATTCATGTGTCAACAGCTTATACAAACTGGTTTAAAAAA
GATGTGAAGGAAATTTTTTACGAACCAAAATATGATCCAAATAAAGTTTTAGAAATGTGT
CGGACATTGAGTGATGAAGAATTGAGCAAGAAAATTTCATCAATAAGTCCGCATTTGCTA
ACTTACACTTTTTCAAAGTCATTGGCCGAATATCTTATAAAATTAGAAGGTTTTGATTTT
CCTGTTGCTATTGTTCGACCATCTATAGTTACTGGAAGTTTTAAAGAGCCATTCCCTGGT
TGGATTGAAACTTTTTCTGGAGCTTCAGTACTTGGATTTATGATAGCAAAAGGAGTTTTA
AGAAATCTTCATATGAAAAAAGATTTCATTTGTGACATCATTCCAGCTGATTTTGTTGTA
AATACAATTTTATCAGCTGCCTGGAAAGTTGGAACTGATCAAAACAGCAGAAATTCTATG
CCGATTATTTATAATTGTTCAAGTAGCACCATTAAACCAATTACAAATAAAGACTTGTTC
AAAGGATTTGAAGAAAATGGAAGGAAGTTTCCACACAGTGATGTAATTTGGTATCCAAAA
ATAAACTTTCACAACACAGCATTGACAGCTAAAATTGCAGTGTTTTTGTCTCAAAAACTT
CCATCACATTTAATAGATTTTGGATTAAAAGCTATGGGACAAAAAGAAAAAATGATAAGA
ACACAAAATTATATTTATAATTATTATGTTGATGCTAAATTTGCAACTACAAACTCAATC
ATTTTTCAAAGTGAAAATTTTGTAAAACTTGGAAGAGAAAGAAGCGAAACAGATTTGAAA
GAATTTGATTTTGATGTAAGAAAAATTGATTGGAAAAAATATTTCGAAACTTATCATCTT
GGATTGAGGCATTACATGGGAAAAGATCATTCCGAGAACTATGATGAATTAAGAAGAAAA
ATTGAAAGGTTAAAATTTGAAGAATTCATCCTTAATGGAACTTTGTTAGCTGGATCGGTT
TATTTATTAAGTAAACTTTAA
>g15428.t1 Gene=g15428 Length=486
MSIADFYSGKCVLITGATGFIGKMIVEKLLRSCPEVDKIFLLARAKKNKTASERVQDITN
VPLFDVIREKNAESFKKICLIEGDIAKENLGLSEADQELFCDKINIIIHSAATLSFTEPL
KIAVATNLQSVKEIMKLGRKTKNLEAFIHVSTAYTNWFKKDVKEIFYEPKYDPNKVLEMC
RTLSDEELSKKISSISPHLLTYTFSKSLAEYLIKLEGFDFPVAIVRPSIVTGSFKEPFPG
WIETFSGASVLGFMIAKGVLRNLHMKKDFICDIIPADFVVNTILSAAWKVGTDQNSRNSM
PIIYNCSSSTIKPITNKDLFKGFEENGRKFPHSDVIWYPKINFHNTALTAKIAVFLSQKL
PSHLIDFGLKAMGQKEKMIRTQNYIYNYYVDAKFATTNSIIFQSENFVKLGRERSETDLK
EFDFDVRKIDWKKYFETYHLGLRHYMGKDHSENYDELRRKIERLKFEEFILNGTLLAGSV
YLLSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15428.t1 | CDD | cd05236 | FAR-N_SDR_e | 10 | 331 | 7.20931E-123 |
| 9 | g15428.t1 | CDD | cd09071 | FAR_C | 356 | 446 | 4.00321E-20 |
| 7 | g15428.t1 | Coils | Coil | Coil | 447 | 467 | - |
| 6 | g15428.t1 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 351 | 3.5E-72 |
| 3 | g15428.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 2 | 482 | 3.5E-136 |
| 4 | g15428.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 482 | 3.5E-136 |
| 1 | g15428.t1 | Pfam | PF07993 | Male sterility protein | 14 | 283 | 4.5E-71 |
| 2 | g15428.t1 | Pfam | PF03015 | Male sterility protein | 358 | 448 | 1.2E-19 |
| 5 | g15428.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 292 | 4.35E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13356 (alcohol-forming fatty acyl-CoA reductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed