General information for g15432.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as V-type proton ATPase 116 kDa subunit a isoform 1.
Parent gene
- The parent gene g15432 is located on chr_4: 5433994..5436295 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15432 | g15432.t2 | isoform | g15432.t2 | 5433994 | 5436295 |
| chr_4 | g15432 | g15432.t2 | exon | g15432.t2.exon1 | 5433994 | 5434594 |
| chr_4 | g15432 | g15432.t2 | cds | g15432.t2.CDS1 | 5433995 | 5434594 |
| chr_4 | g15432 | g15432.t2 | exon | g15432.t2.exon2 | 5434649 | 5434849 |
| chr_4 | g15432 | g15432.t2 | cds | g15432.t2.CDS2 | 5434649 | 5434849 |
| chr_4 | g15432 | g15432.t2 | exon | g15432.t2.exon3 | 5434909 | 5435202 |
| chr_4 | g15432 | g15432.t2 | cds | g15432.t2.CDS3 | 5434909 | 5435202 |
| chr_4 | g15432 | g15432.t2 | exon | g15432.t2.exon4 | 5436179 | 5436295 |
| chr_4 | g15432 | g15432.t2 | cds | g15432.t2.CDS4 | 5436179 | 5436295 |
| chr_4 | g15432 | g15432.t2 | TSS | g15432.t2 | 5436413 | 5436413 |
| chr_4 | g15432 | g15432.t2 | TTS | g15432.t2 | NA | NA |
Sequences
>g15432.t2 Gene=g15432 Length=1213
ATGGGTGCACTTTTTAGAAGTGAAGAAATGTCTTTATGCCAGCTGTTTATACAGCCTGAA
GCAGCATACACAACTGTAGCTGAACTTGGTGAAATTGGAATTGCACAATTTCGTGATCTT
AATCCAGAACTTTCAGCTTTTCAACGTAAATTCACAGCTGAAGTTCGTCGTTGTGATGAA
ATGGAAAGAAAAGTTAATTATATTAAAAAAGAATTGATAAAAGATGGAATGGAAGTTAAA
GATCTTTTTTATAATCTTCCACCTGTTCCTAATCCTCGAGAATTTATCGATCTTGAAGCA
CTTTTTGAGAAAACTGAAAATGAAATTTTGGAATTATCTGAGAATTTCAATCAATTATTG
CAGAATTTTCAAGAACTAACTGAACTTCGTTATGTTCTCGAAAGAACTCAATCATTCTTT
TCTGAGCATGTTTCAAACTATGAAGGATCAAAAGCTGAGGAAGCAGGTGAAACCCAACAG
CTTGGCTTTGTTGCTGGTGTAATTGAGCGTGAAAAAGTATTGGGTTTTGAACGCATTCTT
TGGCGTATTTCACGTGGTAATGTTTTCTTGAGACATGCTGACATTGAGACGCCTTTTACT
GATCCTAAGACTGGAAGAGAACATCATAAGAATGTTTTTGTTGCATTCTTCCAAGGTGAT
CAATTGAAGACACGTGTAAAGAAAGTTTGTGCTGGTTATCATGCTTCGCTTTATCCATGT
CCAAATAATTATGAAGAACGTGATGATATGCTTAAAGGTGTAATGACTCGTCTTCAAGAT
TTAACTATGGTCATCAATCAAACCAAAGATCAACGTCAACGTGTTCTTGTTAGTGTTTCA
AAAGATCTTCCAAAATGGATAATAATTGTGAAGAAAATCAAGGCAATTTATCATACAATG
AATTTATTTAATATTGATGTTTCTGGAAAATGCTTAATTGGTGAATGTTGGATTCCAACA
AATGATTTACATTTGGTTCAATCAGCATTGACAAATGGATCAAATGTAGTTGGTTCAACT
GTTCCATCGTTCATGAATGTCATTGCAACCAATGAAAATCCACCAACATTTAATCGAACA
AATCGTTTCACTCAAGGTTTCCAGAACTTGATCGATGCTTTTGGAGTTGCAAATTATCGT
GAAGCAAATCCTGCACTTTACACAATTATCACTTTTCCATTTTTATTTGCGATTATGTTT
GGTGATTTGGGAC
>g15432.t2 Gene=g15432 Length=404
MGALFRSEEMSLCQLFIQPEAAYTTVAELGEIGIAQFRDLNPELSAFQRKFTAEVRRCDE
MERKVNYIKKELIKDGMEVKDLFYNLPPVPNPREFIDLEALFEKTENEILELSENFNQLL
QNFQELTELRYVLERTQSFFSEHVSNYEGSKAEEAGETQQLGFVAGVIEREKVLGFERIL
WRISRGNVFLRHADIETPFTDPKTGREHHKNVFVAFFQGDQLKTRVKKVCAGYHASLYPC
PNNYEERDDMLKGVMTRLQDLTMVINQTKDQRQRVLVSVSKDLPKWIIIVKKIKAIYHTM
NLFNIDVSGKCLIGECWIPTNDLHLVQSALTNGSNVVGSTVPSFMNVIATNENPPTFNRT
NRFTQGFQNLIDAFGVANYREANPALYTIITFPFLFAIMFGDLG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g15432.t2 | Coils | Coil | Coil | 95 | 129 | - |
| 2 | g15432.t2 | PANTHER | PTHR11629 | VACUOLAR PROTON ATPASES | 1 | 404 | 1.9E-205 |
| 3 | g15432.t2 | PANTHER | PTHR11629:SF61 | V-TYPE PROTON ATPASE SUBUNIT A | 1 | 404 | 1.9E-205 |
| 1 | g15432.t2 | Pfam | PF01496 | V-type ATPase 116kDa subunit family | 28 | 404 | 2.4E-134 |
| 6 | g15432.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 384 | - |
| 7 | g15432.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 385 | 403 | - |
| 5 | g15432.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 404 | 404 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0033179 | proton-transporting V-type ATPase, V0 domain | CC |
| GO:1902600 | proton transmembrane transport | BP |
| GO:0015078 | proton transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed