General information for g15441.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine protease gd.
Parent gene
- The parent gene g15441 is located on chr_4: 5465495..5466450 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15441 | g15441.t1 | TTS | g15441.t1 | 5465361 | 5465361 |
| chr_4 | g15441 | g15441.t1 | isoform | g15441.t1 | 5465495 | 5466450 |
| chr_4 | g15441 | g15441.t1 | exon | g15441.t1.exon1 | 5465495 | 5466201 |
| chr_4 | g15441 | g15441.t1 | cds | g15441.t1.CDS1 | 5465495 | 5466201 |
| chr_4 | g15441 | g15441.t1 | exon | g15441.t1.exon2 | 5466255 | 5466450 |
| chr_4 | g15441 | g15441.t1 | cds | g15441.t1.CDS2 | 5466255 | 5466450 |
| chr_4 | g15441 | g15441.t1 | TSS | g15441.t1 | 5466533 | 5466533 |
Sequences
>g15441.t1 Gene=g15441 Length=903
ATGTTTAATTTTTATGTACAATTAAAAGCAAATGATTGTGGAAAAGTGCAAATAGAAACT
CCAGAGCTTAAAATATTTGATAAAAATTTACAGAATTCAATTCCTGGACAATGGCCTTGG
GTTGTTTCTTTACTATTGATTGATAATAATTTCATTTGTGGATCATCACTTATTTCAAAA
AAACATTTATTAAGTGTTGCTCACTGTATACAATTTGGAAACTTTACTTTACAACCGAGA
AGTTTATATGCACTTTTAGGGCGTCATAATTTAAGTGATGAAACAGAAGAAAATTGGATT
AAATCAAACATTTCAGAAATTTTTGTTCATTCAGATTACAATAAATCTTCAAGATCTTTT
AGAAGTAAAGCTGACATTTCAATTTTAGTGTTAAAAAAAGTTGTAATATTTACTAAATTT
ATTCAACCAATTTGCCTTCCACAATCAACTGTAAATACCATAAATATTGATGGCTTTGTT
ATTGGATATGGACAAAATTCAGAAGACGAAAAACCAAGAGAGATCGCAAAGTATTTTGTT
ATGCATTCAATTAATCCATGGGATTGCTCACTTTTAAACAGAAGTTATTCAAAAATTATA
TCAAGAGATAGTTTTTGTGCTCGTAATGAAAATGCAGCTTTATGTCCTGGAGATTCTGGC
AGTGGATTTGAAATCAAAAATTCAAAAAGTTTCACACTTTATGGGCTTGTCTCACAATGC
TTAAATTCAACAAATTGCAATCCTGATGATTATACAGTTTTTGTTGATGTTGCAAAATAT
ATTCATTGGATTTATGAGAAAACTGGTTTGAAAGCAATCGTAAGAATCGTTACAATTTTG
CATAGGATAGAAAGAAAATTCAAAAACAAAATTCATTTTTTTACTGAGGACAAGATTGCT
TAA
>g15441.t1 Gene=g15441 Length=300
MFNFYVQLKANDCGKVQIETPELKIFDKNLQNSIPGQWPWVVSLLLIDNNFICGSSLISK
KHLLSVAHCIQFGNFTLQPRSLYALLGRHNLSDETEENWIKSNISEIFVHSDYNKSSRSF
RSKADISILVLKKVVIFTKFIQPICLPQSTVNTINIDGFVIGYGQNSEDEKPREIAKYFV
MHSINPWDCSLLNRSYSKIISRDSFCARNENAALCPGDSGSGFEIKNSKSFTLYGLVSQC
LNSTNCNPDDYTVFVDVAKYIHWIYEKTGLKAIVRIVTILHRIERKFKNKIHFFTEDKIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g15441.t1 | CDD | cd00190 | Tryp_SPc | 35 | 267 | 0.000 |
| 7 | g15441.t1 | Gene3D | G3DSA:2.40.10.10 | - | 33 | 258 | 0.000 |
| 6 | g15441.t1 | Gene3D | G3DSA:2.40.10.10 | - | 39 | 264 | 0.000 |
| 2 | g15441.t1 | PANTHER | PTHR24260 | - | 32 | 267 | 0.000 |
| 3 | g15441.t1 | PANTHER | PTHR24260:SF129 | MODULAR SERINE PROTEASE | 32 | 267 | 0.000 |
| 1 | g15441.t1 | Pfam | PF00089 | Trypsin | 32 | 264 | 0.000 |
| 8 | g15441.t1 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 25 | 269 | 21.057 |
| 5 | g15441.t1 | SMART | SM00020 | trypsin_2 | 24 | 264 | 0.000 |
| 4 | g15441.t1 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 31 | 269 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed