General information for g15445.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15445 is located on chr_4: 5487482..5489183 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15445 | g15445.t3 | TSS | g15445.t3 | 5473720 | 5473720 |
| chr_4 | g15445 | g15445.t3 | isoform | g15445.t3 | 5473890 | 5487046 |
| chr_4 | g15445 | g15445.t3 | exon | g15445.t3.exon1 | 5473890 | 5473902 |
| chr_4 | g15445 | g15445.t3 | exon | g15445.t3.exon2 | 5475063 | 5475535 |
| chr_4 | g15445 | g15445.t3 | TTS | g15445.t3 | 5475302 | 5475302 |
| chr_4 | g15445 | g15445.t3 | exon | g15445.t3.exon3 | 5483175 | 5483305 |
| chr_4 | g15445 | g15445.t3 | cds | g15445.t3.CDS1 | 5483242 | 5483305 |
| chr_4 | g15445 | g15445.t3 | exon | g15445.t3.exon4 | 5484535 | 5484670 |
| chr_4 | g15445 | g15445.t3 | cds | g15445.t3.CDS2 | 5484535 | 5484670 |
| chr_4 | g15445 | g15445.t3 | exon | g15445.t3.exon5 | 5486947 | 5487046 |
| chr_4 | g15445 | g15445.t3 | cds | g15445.t3.CDS3 | 5486947 | 5487046 |
Sequences
>g15445.t3 Gene=g15445 Length=853
AAAATTGAGCAAATTTAACTTTGATTGATCATCATAAAACCAAAAAACCTTGAACTTAGT
CCACTTTTCAATCACTCAATGCAATAGCAACAACAGACATAATAGAATCTGAGTCAAGAT
TGATAGAAAGTTTTACATAGTGACTGCTAAATGCATAAAATACAAACAATTGATAAGAAC
TAAAAATCTCATATTGCAAGCTATAAAAAATTACTCACGATTTGGACTTTGAAATTGTAA
AAAGAAAGGAAATAAAAAAACATTTGTGAATTAATTGTGAAAAAAAAAAAATTCAATTGT
CGTTAAATAAAATACAAGCAAATTTGAATAATTTCAATAAAAATTTAATTCAGTGTGAAT
TGTGATTGTAATGTAGGAAAAAGAACAAAGTAAATGTGTCATTGATTTGAAATTTAAATA
TTAAACAAGAAAGAGAATTTAAATTAAATTAAAAGTTCAACTGCAAGCGTAAATTTTGAA
ATAAAGCCAAACATAAAAGATAATATCAATAGCATTTTTCTTGATGTGATAAAAAAATTC
CAATCATAACAAAATGTCAACAAAAACAGTTAGTTTCGAAGATGTAATCTATGAGGTACA
AACGAAACGCAATTTCACAAGCAATTCATCCGTTCAAAAACAACAATTGCTTAAAGGTGT
TTCTGGAATTTTTAGACATGGTCAGCTTTCTGTAATCATGGGACCATCAGGAGCTGGCAA
AAGTAGTTTACTAAATGCTCTTTCTGGTTATAGAACAGAAGGCGTTTCAGGAACAATTTT
GTTAAACCGTAAAACCTCATGTTATATTCAACAAGAAGACTATCACCATACACTGATCAC
TGTCAATGAAATG
>g15445.t3 Gene=g15445 Length=100
MSTKTVSFEDVIYEVQTKRNFTSNSSVQKQQLLKGVSGIFRHGQLSVIMGPSGAGKSSLL
NALSGYRTEGVSGTILLNRKTSCYIQQEDYHHTLITVNEM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15445.t3 | Gene3D | G3DSA:3.40.50.300 | - | 2 | 100 | 0 |
| 2 | g15445.t3 | PANTHER | PTHR48041:SF57 | FI02074P | 29 | 99 | 0 |
| 3 | g15445.t3 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 29 | 99 | 0 |
| 1 | g15445.t3 | Pfam | PF00005 | ABC transporter | 33 | 94 | 0 |
| 4 | g15445.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 28 | 96 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
