Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP-binding cassette sub-family G member 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15445 g15445.t5 isoform g15445.t5 5487482 5489183
chr_4 g15445 g15445.t5 exon g15445.t5.exon1 5487482 5487491
chr_4 g15445 g15445.t5 exon g15445.t5.exon2 5487560 5488027
chr_4 g15445 g15445.t5 cds g15445.t5.CDS1 5487685 5488027
chr_4 g15445 g15445.t5 exon g15445.t5.exon3 5488080 5488336
chr_4 g15445 g15445.t5 cds g15445.t5.CDS2 5488080 5488336
chr_4 g15445 g15445.t5 exon g15445.t5.exon4 5488437 5489183
chr_4 g15445 g15445.t5 cds g15445.t5.CDS3 5488437 5488778
chr_4 g15445 g15445.t5 TTS g15445.t5 5489181 5489181
chr_4 g15445 g15445.t5 TSS g15445.t5 NA NA

Sequences

>g15445.t5 Gene=g15445 Length=1482
GCTGATTATATAATTGAACTTTGCGACACAGAACCAGAAGTGATTCCACATTTTTCATCT
CATTTTCTGAATGGCAAAATTCAATGTCTTCCAACAAATTCTTCATCAAATGATGCCTCA
ATTTGTGAATACCAAATGAAGCATTCAATTAATACTCTACAAATGGAAATTCACAGACCA
AAAGAAAGCACAATTATGCAAAAAATGAAACAACTTTCAAAATTCTTCAAAAGTGAATAT
GCTTTGTCAAGTCTTCAACAATTTCTTGTACTTTTTAATATGATGATGACAAAAATTATG
AGAAATCGTGTCGTGCTGTGGATTCAATTATTCCATCATCTTGGTTGTGGATTTTTTATT
GGTCTAATATTTTTAAATTCTGCAAATGATGGAATGAGAATGTTTGATCATCTAAAGTTC
TGCATGGGTTGTGTCTTTTTTGTTGTTTATACACAAATTATGGTGCCAATTTTAAGCTAT
CCATCAGAACTAAGAGTCGTTAAAAAAGAATGTTTCAACAGATGGTATGGACTGACACCT
TACTATCTTGCACTTACTTTTTCACGTTTACCACTGCAAATTTTCTTCAATTTAATCTTC
TCATCGATTGTGTACTTTTTGAGTGGTCTGCCAATGGAACCATGGAGATTTTTCCTTTTC
GCACTTATTGGAGTTGTTGTTTCTATTGTTGCTGAAGGATTGGGTTTGGCTATTGGTGCT
ACTTTTAATGTCACGAATGGTAGCGCAGTTGGACCAGCACTCATGGCACCATTCCTTGGA
CTAGCAATTTATGGTTTCGATTTTGCTGCCGATGTTCCAATTTTTATGTATGCACTCATG
AAATTTTCATTCATACGTGGTGGCGTTGTTTCTTTAGTTTTGACAGTTTTTGGCTTCAAT
CGTGAAAAACTTGAATGCAGTGATGTTTATTGCCATTTTGATGATCCAAAAGTACTTTTA
AGATATTTAAGAATTGAAAATGTTTCATTGTTCACTGAAATTAGTGTTCTTATTGGTTTA
ATGATTGCTTTTAGAGCTTTATTTTATTTAAGTTTAAGAAAAAGATTTTATAAGTAAAAT
TATCAGAAATATTATTGGAAGGAAAAATTTATAAACAGGAAATGGAAATTTTTTTAGTTC
TTATAATTTAACTCTCTTTTTCAAGACTTATGAATCTCTTTGTAAATTTAAGTTTTGATT
AAAAAATATCAAAAAAATCAATTTTTTTAGAATATTTCGAAATTTTTCTAAAAGTTTTTG
TTTTAACGACGAAGCAGAAAGAAATACAAAAATAATCAAAAGAAAATTTTTTCATGCCTT
GAGTATTTTATTAAAAAAGTATGAAAAATAAAATTTGATAAATATAATCTCATTAAAAAT
TATTTGAAACATAAATAGCAAATAGTTTTAATGTTTTGTAAATTTCTTAATTATTTATTG
CATTATTTCCAAAATAAAGAACTCATGATTAAAATTATTGAA

>g15445.t5 Gene=g15445 Length=313
MKHSINTLQMEIHRPKESTIMQKMKQLSKFFKSEYALSSLQQFLVLFNMMMTKIMRNRVV
LWIQLFHHLGCGFFIGLIFLNSANDGMRMFDHLKFCMGCVFFVVYTQIMVPILSYPSELR
VVKKECFNRWYGLTPYYLALTFSRLPLQIFFNLIFSSIVYFLSGLPMEPWRFFLFALIGV
VVSIVAEGLGLAIGATFNVTNGSAVGPALMAPFLGLAIYGFDFAADVPIFMYALMKFSFI
RGGVVSLVLTVFGFNREKLECSDVYCHFDDPKVLLRYLRIENVSLFTEISVLIGLMIAFR
ALFYLSLRKRFYK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g15445.t5 PANTHER PTHR48041:SF78 ABC TRANSPORTER EXPRESSED IN TRACHEA, ISOFORM A-RELATED 23 309 2.3E-51
3 g15445.t5 PANTHER PTHR48041 ABC TRANSPORTER G FAMILY MEMBER 28 23 309 2.3E-51
1 g15445.t5 Pfam PF01061 ABC-2 type transporter 41 246 2.7E-21
14 g15445.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 34 -
26 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 55 -
18 g15445.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 56 60 -
24 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 83 -
12 g15445.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 84 94 -
25 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 116 -
17 g15445.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 117 135 -
22 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 136 162 -
13 g15445.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 163 173 -
23 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 174 197 -
16 g15445.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 198 202 -
21 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 203 221 -
11 g15445.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 222 232 -
20 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 233 254 -
19 g15445.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 255 284 -
27 g15445.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 285 307 -
15 g15445.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 308 313 -
10 g15445.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 58 80 -
4 g15445.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 95 117 -
8 g15445.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 138 160 -
9 g15445.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 170 192 -
7 g15445.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 199 221 -
6 g15445.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 231 253 -
5 g15445.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 282 304 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed