Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP-binding cassette sub-family G member 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15452 g15452.t12 TTS g15452.t12 5501423 5501423
chr_4 g15452 g15452.t12 isoform g15452.t12 5501484 5503569
chr_4 g15452 g15452.t12 exon g15452.t12.exon1 5501484 5501819
chr_4 g15452 g15452.t12 cds g15452.t12.CDS1 5501484 5501819
chr_4 g15452 g15452.t12 exon g15452.t12.exon2 5501877 5502133
chr_4 g15452 g15452.t12 cds g15452.t12.CDS2 5501877 5502133
chr_4 g15452 g15452.t12 exon g15452.t12.exon3 5502955 5503569
chr_4 g15452 g15452.t12 cds g15452.t12.CDS3 5502955 5503126
chr_4 g15452 g15452.t12 TSS g15452.t12 5504344 5504344

Sequences

>g15452.t12 Gene=g15452 Length=1208
GTCTCGACTGTGTAGCATCAACACGCTGCATTGAATATCTCAAAAAACTCGCACTCGAAG
GACGTACTATAATTTGTACAATTCATCAACCTTCAGCATCGATTCTCAAATTATTTGATC
AAATTTATGCAATAGCAAATGGAAGTTGCATTTATCAAGGCTCATCGACAAAACTTTTGG
AATTTTTAAATGACATTGAACTTCCTTGTCCATCAACTTACAATCCAATTGATTTTTTAC
TTGAAATTGCTAATGATTGTTATGGAGAACAAAGTGAAAAATTGATACAAAAAATTGAAA
ATGGGAAAAATTTTGATTATTGCAATGTGAAAGAAAAATATGAAAATTTTATTTTATCAG
AAGTGAATTATCATCAAAGTTCATCATATTCAAAACAAGTTTATTATTTACTAAAAAGAA
CTTTTCTTACAACGTCTCGTGACATGACAATTTTTACTTTTCGATATTTCTTTCATTTAA
TTCTTGGACTTACTTTTGGGTTAATGTATCATGACATGGGAAATCGAGGAGAATATATGC
TGAATAATTACAAATATTTGGTGCTCTCTGTGGTTATTTTGGTTTATACTTCTTATTATT
CTATTTATTTTCAATTTCTTCACGAATTTTCAATAGTAAAAAGAGAATATTTCAATGGCT
GGTATTCAACAGAAGCATACTACACTGCTTTAATACTTTTTGACGTTCCAATGACTCTAA
TATGTTGTACAACTTATGTTTCAATAACTTATTGGTTAACAAATCAACCAGCAGAATTTT
ATCGATATATTTTATTCTTAAGTTTCATCATTTTGATGTCATTTGCATCACAATCACTTG
GTGTTATGTTTTCATCAGTTTTAGACATTAAGACGGCTACAACATTTAGTTTTATGTTTC
TTCTTCCATTCATTGTCTTATCAGGAATTTTAATAGTGACAAGTCACACGCCTGAATTTT
TTAAATTTTTCTTCGATTTTAATTTCCTTGACAGTACTCTAAAAGGAGTTTTGAATTCAG
TTTTGGGTCTTGGTAGGAGAAAAGCAGAATGTGATGATTTATATTGTCATTTGGTAGAAC
CAGGGAAACTTTTAAGTGATTTTGGTGCAGTGATTGATATTTCAAGAGCATTTAAAGTTA
TTTTGATTTATATTGTGATTTGTCAAATTATTTCTTATTTAATTATTAGATATCGTTTAA
GAAAATGA

>g15452.t12 Gene=g15452 Length=254
MTIFTFRYFFHLILGLTFGLMYHDMGNRGEYMLNNYKYLVLSVVILVYTSYYSIYFQFLH
EFSIVKREYFNGWYSTEAYYTALILFDVPMTLICCTTYVSITYWLTNQPAEFYRYILFLS
FIILMSFASQSLGVMFSSVLDIKTATTFSFMFLLPFIVLSGILIVTSHTPEFFKFFFDFN
FLDSTLKGVLNSVLGLGRRKAECDDLYCHLVEPGKLLSDFGAVIDISRAFKVILIYIVIC
QIISYLIIRYRLRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g15452.t12 PANTHER PTHR48041:SF78 ABC TRANSPORTER EXPRESSED IN TRACHEA, ISOFORM A-RELATED 5 250 7.8E-46
3 g15452.t12 PANTHER PTHR48041 ABC TRANSPORTER G FAMILY MEMBER 28 5 250 7.8E-46
1 g15452.t12 Pfam PF01061 ABC-2 type transporter 4 192 1.7E-25
14 g15452.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
19 g15452.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 26 -
12 g15452.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 27 37 -
22 g15452.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 38 58 -
13 g15452.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 59 77 -
18 g15452.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 78 105 -
10 g15452.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 106 111 -
20 g15452.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 112 136 -
16 g15452.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 137 147 -
17 g15452.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 148 166 -
11 g15452.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 167 228 -
21 g15452.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 229 248 -
15 g15452.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 249 254 -
5 g15452.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 23 -
7 g15452.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 38 60 -
4 g15452.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 81 103 -
9 g15452.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 118 140 -
8 g15452.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 147 169 -
6 g15452.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 226 248 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed