Gene loci information

Transcript annotation

  • This transcript has been annotated as ATP-binding cassette sub-family G member 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15452 g15452.t15 TTS g15452.t15 5501423 5501423
chr_4 g15452 g15452.t15 isoform g15452.t15 5501484 5504332
chr_4 g15452 g15452.t15 exon g15452.t15.exon1 5501484 5501819
chr_4 g15452 g15452.t15 exon g15452.t15.exon2 5501877 5502133
chr_4 g15452 g15452.t15 cds g15452.t15.CDS1 5502113 5502133
chr_4 g15452 g15452.t15 exon g15452.t15.exon3 5503001 5503569
chr_4 g15452 g15452.t15 cds g15452.t15.CDS2 5503001 5503569
chr_4 g15452 g15452.t15 exon g15452.t15.exon4 5503807 5504332
chr_4 g15452 g15452.t15 cds g15452.t15.CDS3 5503807 5504332
chr_4 g15452 g15452.t15 TSS g15452.t15 5504344 5504344

Sequences

>g15452.t15 Gene=g15452 Length=1688
ATGACCGAACATATAAGTCTTCGTTTCGCGAACGTCTCTTGCCATGTGCATACAATTTCA
TTTAGGCATAGATTAAAGAAAATTCTTAAGAATGTTTCGGGTAATTTTAATGGTGGTGAA
TTGACAGCTATTGTTGGTCCAAGTGGAAGTGGAAAAAGTACACTTTTAGATTGTCTTTCG
GGTTTTAGAAGGACAAATGTTAGTGGAAAATTTATCGTCGATGGAAATGAAATTTCAATC
GATGATATTCGACAAATGTCGTCATATGTTATGCAAGATCAAAGTCTCCATATACATCTT
ACTGTGCGCGAAATTATGGCGCTGTCCTTGAACTTGAGAGATAAACAAAATCTGAGTGAT
GCGGCAAAAAAAAATAAAATTTTTAATGTTTTTGAAACACTCGGCATTGAAAGAAAATGT
GAGACTGTAATGACGGAATTAAGTGGTGGCGAAAGAAAAAGAGTTCAAATTGCTATTGAA
TTGGTCAACGATCCGAAAATTTTATTTGTTGATGAAGCTACTACAGGTCTCGACTGTGTA
GCATCAACACGCTGCATTGAATATCTCAAAAAACTCGCACTCGAAGGACGTACTATAATT
TGTACAATTCATCAACCTTCAGCATCGATTCTCAAATTATTTGATCAAATTTATGCAATA
GCAAATGGAAGTTGCATTTATCAAGGCTCATCGACAAAACTTTTGGAATTTTTAAATGAC
ATTGAACTTCCTTGTCCATCAACTTACAATCCAATTGATTTTTTACTTGAAATTGCTAAT
GATTGTTATGGAGAACAAAGTGAAAAATTGATACAAAAAATTGAAAATGGGAAAAATTTT
GATTATTGCAATGTGAAAGAAAAATATGAAAATTTTATTTTATCAGAAGTGAATTATCAT
CAAAGTTCATCATATTCAAAACAAGTTTATTATTTACTAAAAAGAACTTTTCTTACAACG
TCTCGTGACATGACAATTTTTACTTTTCGATATTTCTTTCATTTAATTCTTGGACTTACT
TTTGGGTTAATGTATCATGACATGGGAAATCGAGGAGAATATATGCTGAATAATTACAAA
TATTTGGTGCTCTCTTTCTTCACGAATTTTCAATAGTAAAAAGAGAATATTTCAATGGCT
GGTATTCAACAGAAGCATACTACACTGCTTTAATACTTTTTGACGTTCCAATGACTCTAA
TATGTTGTACAACTTATGTTTCAATAACTTATTGGTTAACAAATCAACCAGCAGAATTTT
ATCGATATATTTTATTCTTAAGTTTCATCATTTTGATGTCATTTGCATCACAATCACTTG
GTGTTATGTTTTCATCAGTTTTAGACATTAAGACGGCTACAACATTTAGTTTTATGTTTC
TTCTTCCATTCATTGTCTTATCAGGAATTTTAATAGTGACAAGTCACACGCCTGAATTTT
TTAAATTTTTCTTCGATTTTAATTTCCTTGACAGTACTCTAAAAGGAGTTTTGAATTCAG
TTTTGGGTCTTGGTAGGAGAAAAGCAGAATGTGATGATTTATATTGTCATTTGGTAGAAC
CAGGGAAACTTTTAAGTGATTTTGGTGCAGTGATTGATATTTCAAGAGCATTTAAAGTTA
TTTTGATTTATATTGTGATTTGTCAAATTATTTCTTATTTAATTATTAGATATCGTTTAA
GAAAATGA

>g15452.t15 Gene=g15452 Length=371
MTEHISLRFANVSCHVHTISFRHRLKKILKNVSGNFNGGELTAIVGPSGSGKSTLLDCLS
GFRRTNVSGKFIVDGNEISIDDIRQMSSYVMQDQSLHIHLTVREIMALSLNLRDKQNLSD
AAKKNKIFNVFETLGIERKCETVMTELSGGERKRVQIAIELVNDPKILFVDEATTGLDCV
ASTRCIEYLKKLALEGRTIICTIHQPSASILKLFDQIYAIANGSCIYQGSSTKLLEFLND
IELPCPSTYNPIDFLLEIANDCYGEQSEKLIQKIENGKNFDYCNVKEKYENFILSEVNYH
QSSSYSKQVYYLLKRTFLTTSRDMTIFTFRYFFHLILGLTFGLMYHDMGNRGEYMLNNYK
YLVLSFFTNFQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g15452.t15 CDD cd03213 ABCG_EPDR 4 229 2.46794E-72
6 g15452.t15 Gene3D G3DSA:3.40.50.300 - 4 242 6.2E-58
3 g15452.t15 PANTHER PTHR48041:SF78 ABC TRANSPORTER EXPRESSED IN TRACHEA, ISOFORM A-RELATED 5 367 1.7E-113
4 g15452.t15 PANTHER PTHR48041 ABC TRANSPORTER G FAMILY MEMBER 28 5 367 1.7E-113
2 g15452.t15 Pfam PF00005 ABC transporter 29 174 3.8E-27
1 g15452.t15 Pfam PF19055 ABC-2 type transporter 204 263 1.3E-5
8 g15452.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 323 -
9 g15452.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 324 345 -
7 g15452.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 346 371 -
12 g15452.t15 ProSitePatterns PS00211 ABC transporters family signature. 147 161 -
14 g15452.t15 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 7 247 19.635
13 g15452.t15 SMART SM00382 AAA_5 38 224 9.6E-14
5 g15452.t15 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 17 244 4.9E-49
11 g15452.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 326 345 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed