General information for g15457.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g15457 is located on chr_4: 5520793..5521775 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15457 | g15457.t16 | TTS | g15457.t16 | 5519529 | 5519529 |
| chr_4 | g15457 | g15457.t16 | isoform | g15457.t16 | 5519531 | 5521775 |
| chr_4 | g15457 | g15457.t16 | exon | g15457.t16.exon1 | 5519531 | 5520098 |
| chr_4 | g15457 | g15457.t16 | cds | g15457.t16.CDS1 | 5519841 | 5520098 |
| chr_4 | g15457 | g15457.t16 | exon | g15457.t16.exon2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t16 | cds | g15457.t16.CDS2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t16 | exon | g15457.t16.exon3 | 5520469 | 5520755 |
| chr_4 | g15457 | g15457.t16 | cds | g15457.t16.CDS3 | 5520469 | 5520623 |
| chr_4 | g15457 | g15457.t16 | exon | g15457.t16.exon4 | 5521571 | 5521775 |
| chr_4 | g15457 | g15457.t16 | TSS | g15457.t16 | 5521865 | 5521865 |
Sequences
>g15457.t16 Gene=g15457 Length=1307
ATGGCACCATTACGTTGGGGAATTGCATCAGCTGGTAAAATTTCAAATGACTTTTGTGCA
GCTTTATCAACATATTCTCAAGATGATCATCAGGTCGTCGCGGTTGCGGCTCGCTCATTG
GAGGATGCAAAGGAATTTGCAGAAACATTCAATATTCCTAGGACTCATGAAGGTTACCAA
AAATTAGCTCAGGATCCAGAAGTTGATGTTGTTTATATTGGATCTATTAATACCACACAT
CTTGAAATTGGTTTAATGATGTTGGATGGTGGCAAACATATTCTTTGTGAAAAGCCTTTG
ACATTAAATGTAAAACAAGCTGAACAACTTTTAAATCATGCAAAAGAGAAGAAATTATTT
TGTATGGAAGCAATTTGGTCAAGATATTTTCCAATTTATAGACAACTTAAAGCTCGTATT
AACAATGGTGATCTTGGTGACATTAAAGAAGTTTATGCTGAATTTGGTGTTGAAATGGCA
GATGTTGATCGTGAAAAATGAACTTGGAGGTGGTTCCACATTGGATATTGGAACCTATGC
AATTCAATTTTCTCAATTTGTCTTTCGTGCTGAACCGACATCAATTAAAGCAACTGGCAA
ATTAAATGAAGAAGGTGTTGATACTGAAACTGAAGTTGAATTAAAATATCCAAATGGTGG
TGTTGCTCGTTATAAGACTAATTCAACAAAAGAACTCAGCAACATTGCAACTGTAACAGG
AAGCAAAGGCACAATGAAGCTCCATACTTTCTGGTGTCCAACTGAATTAGAAGATGTTGA
TGGTCAAATGAAAAAATTCGAATTACCACAAAATCGACTTGGTAAATTTATTTACTTCCA
TGGTGCTGGCATGCGATATGAAGCAGAAGAAGTAAGAAGATGCATCAATGAAGGTTTGAC
TGAAAGTGAAGATGCAACACATAATGACAGTCTTGTCATTGCTCGTATTCGTGATGAAAT
TCGTAGACAACTTGGTGTTAAATTTGATGAAGACTGAAATTTAATGGAAACTAAATTATG
AAATGGATCTCTTGAAATGTGACATGATAAGCAAAGAAATAAGAAAATTGTTAGTTTTGT
ATAAATATTGAATTATGAGGAAGAGAAGAAATACCAAAAATGTCCCAAAAAATTAATATA
TTTCATAATATCCGAACGAAATTTTTTTCATTCCTGTAATATTTTGTTTGGTTATATTTA
ATTATTTGAACGTCGATATATTTTTAAGTTTTATTTTAATCTATTATTTTGTATGCACGA
ATGAAATTCATTTATCATAACAATAAAATAAAATTACATATTTTGCA
>g15457.t16 Gene=g15457 Length=219
MQKRRNYFVWKQFGQDIFQFIDNLKLVLTMVILVTLKKFMLNLVLKWQMLIVKNELGGGS
TLDIGTYAIQFSQFVFRAEPTSIKATGKLNEEGVDTETEVELKYPNGGVARYKTNSTKEL
SNIATVTGSKGTMKLHTFWCPTELEDVDGQMKKFELPQNRLGKFIYFHGAGMRYEAEEVR
RCINEGLTESEDATHNDSLVIARIRDEIRRQLGVKFDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15457.t16 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 44 | 219 | 1.8E-43 |
| 2 | g15457.t16 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 47 | 217 | 3.3E-43 |
| 3 | g15457.t16 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 47 | 217 | 3.3E-43 |
| 1 | g15457.t16 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 47 | 184 | 4.1E-7 |
| 7 | g15457.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 25 | - |
| 8 | g15457.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 26 | 45 | - |
| 6 | g15457.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 46 | 219 | - |
| 4 | g15457.t16 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 46 | 184 | 5.72E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
