General information for g15457.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g15457 is located on chr_4: 5520793..5521775 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15457 | g15457.t17 | TTS | g15457.t17 | 5519529 | 5519529 |
| chr_4 | g15457 | g15457.t17 | isoform | g15457.t17 | 5519531 | 5521775 |
| chr_4 | g15457 | g15457.t17 | exon | g15457.t17.exon1 | 5519531 | 5520098 |
| chr_4 | g15457 | g15457.t17 | cds | g15457.t17.CDS1 | 5519841 | 5520098 |
| chr_4 | g15457 | g15457.t17 | exon | g15457.t17.exon2 | 5520186 | 5520405 |
| chr_4 | g15457 | g15457.t17 | cds | g15457.t17.CDS2 | 5520186 | 5520405 |
| chr_4 | g15457 | g15457.t17 | exon | g15457.t17.exon3 | 5520464 | 5520755 |
| chr_4 | g15457 | g15457.t17 | cds | g15457.t17.CDS3 | 5520464 | 5520755 |
| chr_4 | g15457 | g15457.t17 | exon | g15457.t17.exon4 | 5521571 | 5521775 |
| chr_4 | g15457 | g15457.t17 | cds | g15457.t17.CDS4 | 5521571 | 5521775 |
| chr_4 | g15457 | g15457.t17 | TSS | g15457.t17 | 5521865 | 5521865 |
Sequences
>g15457.t17 Gene=g15457 Length=1285
ATGGCACCATTACGTTGGGGAATTGCATCAGCTGGTAAAATTTCAAATGACTTTTGTGCA
GCTTTATCAACATATTCTCAAGATGATCATCAGGTCGTCGCGGTTGCGGCTCGCTCATTG
GAGGATGCAAAGGAATTTGCAGAAACATTCAATATTCCTAGGACTCATGAAGGTTACCAA
AAATTAGCTCAGGATCCAGAAGTTGATGTTGTTTATATTGGATCTATTAATACCACACAT
CTTGAAATTGGTTTAATGATGTTGGATGGTGGCAAACATATTCTTTGTGAAAAGCCTTTG
ACATTAAATGTAAAACAAGCTGAACAACTTTTAAATCATGCAAAAGAGAAGAAATTATTT
TGTATGGAAGCAATTTGGTCAAGATATTTTCCAATTTATAGACAACTTAAAGCTCGTATT
AACAATGGTGATCTTGGTGACATTAAAGAAGTTTATGCTGAATTTGGTGTTGAAATGGCA
GATGTTGATCGTGTAATGAAAAATGAACTTGGAGGTGGTTCCACATTGGATATTGGAACC
TATGCAATTCAATTTTCTCAATTTGTCTTTCGTGCTGAACCGACATCAATTAAAGCAACT
GGCAAATTAAATGAAGAAGGTGTTGATACTGAAACTGAAGTTGAATTAAAATATCCAAAT
GGTGGTGTTGCTCGTTATAAGACTAATTCAACAAAAGAACTCAGCAACATTGCAACTCTC
CATACTTTCTGGTGTCCAACTGAATTAGAAGATGTTGATGGTCAAATGAAAAAATTCGAA
TTACCACAAAATCGACTTGGTAAATTTATTTACTTCCATGGTGCTGGCATGCGATATGAA
GCAGAAGAAGTAAGAAGATGCATCAATGAAGGTTTGACTGAAAGTGAAGATGCAACACAT
AATGACAGTCTTGTCATTGCTCGTATTCGTGATGAAATTCGTAGACAACTTGGTGTTAAA
TTTGATGAAGACTGAAATTTAATGGAAACTAAATTATGAAATGGATCTCTTGAAATGTGA
CATGATAAGCAAAGAAATAAGAAAATTGTTAGTTTTGTATAAATATTGAATTATGAGGAA
GAGAAGAAATACCAAAAATGTCCCAAAAAATTAATATATTTCATAATATCCGAACGAAAT
TTTTTTCATTCCTGTAATATTTTGTTTGGTTATATTTAATTATTTGAACGTCGATATATT
TTTAAGTTTTATTTTAATCTATTATTTTGTATGCACGAATGAAATTCATTTATCATAACA
ATAAAATAAAATTACATATTTTGCA
>g15457.t17 Gene=g15457 Length=324
MAPLRWGIASAGKISNDFCAALSTYSQDDHQVVAVAARSLEDAKEFAETFNIPRTHEGYQ
KLAQDPEVDVVYIGSINTTHLEIGLMMLDGGKHILCEKPLTLNVKQAEQLLNHAKEKKLF
CMEAIWSRYFPIYRQLKARINNGDLGDIKEVYAEFGVEMADVDRVMKNELGGGSTLDIGT
YAIQFSQFVFRAEPTSIKATGKLNEEGVDTETEVELKYPNGGVARYKTNSTKELSNIATL
HTFWCPTELEDVDGQMKKFELPQNRLGKFIYFHGAGMRYEAEEVRRCINEGLTESEDATH
NDSLVIARIRDEIRRQLGVKFDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15457.t17 | Gene3D | G3DSA:3.40.50.720 | - | 3 | 123 | 0.0e+00 |
| 8 | g15457.t17 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 124 | 324 | 0.0e+00 |
| 3 | g15457.t17 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 2 | 322 | 0.0e+00 |
| 4 | g15457.t17 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 2 | 322 | 0.0e+00 |
| 1 | g15457.t17 | Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 4 | 121 | 0.0e+00 |
| 2 | g15457.t17 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 137 | 238 | 6.8e-06 |
| 5 | g15457.t17 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 156 | 0.0e+00 |
| 6 | g15457.t17 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 130 | 289 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00078 (dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed